Gcaud8424.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8424.t1
Unique NameGcaud8424.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length479
Homology
BLAST of Gcaud8424.t1 vs. uniprot
Match: A0A2V3IUK7_9FLOR (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 369 bits (947), Expect = 4.140e-120
Identity = 197/446 (44.17%), Postives = 277/446 (62.11%), Query Frame = 0
Query:   16 AAVEIANALTGTSLRCCVVHEPPIAFLDEKEYVNGGISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNGTTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTSINSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSY----------LSRLFRGI----------------QNKPLLYRFP-RAFLSVFKAMIT-----HMTASLVQEQITSEFRSVEDFRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECH---KGRSPRRGSLADSYEDAIRGLCRYGILLDSTARLAVNGLYCGRFLLS-DNLLTSGLSLVLPKGSNLTRAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAFSCCGAYILAMILKNMLRRDRSAKRQ 425
            A ++++ AL+GT LRCCV+HEPPI +LD   Y N GI+G++ +YL EMQALL W CSE  PY  G GT+ FN FIDMM+NC  NG  + D  C+C+IGI GW  +A R +RVDLLPPF  DG RV F +S +  S + LFF+TTFD+ SW C+F+II+LF + K LD RFAP  S   P A++S+           +RL   I                QN+   + F     + +F  ++       MTA+LVQE + S+++SVED ++CRI PE VC+P G A+ T+WN +IA G +CH   KG++  RGS  ++ +    G C++G++LDST + A++G YCG+ L S + + T GLS++LPK SNLT+AM +ATLK+  E S PS+++YF+ + KC   T S+L   KL L FV A   C   I   + + + RR  S K++
Sbjct:   22 AGIQLSKALSGTELRCCVIHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTS-FNRFIDMMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANSWGRCLHFLRTNWNRLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYG-DCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFAIVACLGCISIKMWQRVWRRPNSPKKE 465          
BLAST of Gcaud8424.t1 vs. uniprot
Match: A0A2V3IME4_9FLOR (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 357 bits (915), Expect = 4.140e-115
Identity = 197/478 (41.21%), Postives = 281/478 (58.79%), Query Frame = 0
Query:   19 EIANALTGTSLRCCVVHEPPIAFLDEKEYVNGGISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNGTTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTSINSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSYLSRLFRGIQNKPLLYRFPRAFLSVFKAMI-----------------------------------THMTASLVQEQITSEFRSVEDFRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYEDAIRGL----CRYGILLDSTARLAVNGLYCGRFLLSDN-LLTSGLSLVLPKGSNLTRAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAFSCCGAYILAMILKNMLRRDRSAKRQSAPKLVEESLSREYTILKLGNLARSLSYLSD 456
            +++ AL+G  LRCC++ EPPIAF+D++ Y NGG+SG++A+YLREMQ  L W+CS V  Y  G   T+FN+F+ MME+C+ NG  R D  C CDIGISGW     R+ RVD LPPF  DG+ V+F IS S  S   +FF+TTFD  +W  IF ++LLF+  K  D +F P  S    + ++  + R    +   P LYRF RA  S F  MI                                     MTASLVQE +++ F+S++DF++CRI P  VC+P GGA++ +WN SIA    CHK R P     A SY++    +    C+YG+LL+STA  A+N  YCG+ L ++  + + GL++VLPK SNLT  MS ATLKIT E++ P +E+YF +I KC++   + L  RKL LFF +A  C GA++L + + N +  +++ +R+   K  E+S  R+   +   N +  +S  SD
Sbjct:   27 DMSGALSGLQLRCCILDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYT-GGKQTSFNHFVRMMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAI-EVCHKQRQP---FFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIAL-CTGAFLLLLRIINNVW-NQAIERRVEDK--EQSKLRDIKTMSSSNCSIDISMSSD 495          
BLAST of Gcaud8424.t1 vs. uniprot
Match: A0A2V3IMD4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 336 bits (861), Expect = 3.510e-106
Identity = 184/437 (42.11%), Postives = 252/437 (57.67%), Query Frame = 0
Query:   22 NALTGTSLRCCVVHEPPIAFLDEKEYVNGGISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNGTTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTSINSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSYLSRLFRGIQNKPLLYR--------------------FPR---AFLSVFKAMIT------------HMTASLVQEQITSEFRSVEDFRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYEDAIRGL----CRYGILLDSTARLAVNGLYCGRFLLSDN-LLTSGLSLVLPKGSNLTRAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAFSCCGAYILAMILKNMLRR 418
              L G  LRCC+V+EPPIAFL+++ Y N GI G++A YL +MQ  L W CS V  Y  GS TT FNNFI MME C+ NGT + D  C+CDIGI GW   + R+ RVD LPPF  D ++VIF IS S  S  S FF+TTFD   W CIF ++LLF   ++    F      +  + + + + R+   + N P  YR                    F R    FL + K ++T             MTAS+VQE +TSEF+S +DF++CRI P+ VC+P GG+ DTYW   +A    CHKGRSP    L  SYE+  +G+    CR+GILL+ST    ++  YCG  L + N + T GL++VLPK S  T  MS+ATLKIT+  + PS+E ++     C+ E ++ LP +KL LFF++AF     ++  +++K  L R
Sbjct:   30 GVLAGAKLRCCIVYEPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGS-TTGFNNFITMMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFS-AFGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPH---LMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGFLFLTVVVIKWTLNR 461          
BLAST of Gcaud8424.t1 vs. uniprot
Match: A0A2V3IMD5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 279 bits (713), Expect = 2.000e-85
Identity = 174/445 (39.10%), Postives = 246/445 (55.28%), Query Frame = 0
Query:   34 VHEPPIAFLDEKEYVNGGISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNGTTRID-DQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTSINSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRH-PQASDSYLSRLFRGIQNKPLLYRFPRAFLS-VFKAMI----------------------------------THMTASLVQEQITSEFRSVEDFRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADS-YEDAIRGLCRYGILLDSTARLAVNGLYCGRF-LLSDNLLTSGLSLVLPKGSNLTRAMSIATLKITEELSPPS--VERYFRNIDKCNVETSSILPLRKLVLFFVLAFSCCGAYILAMILKNMLRRDRSAKRQSAPKLVEESLSR 437
            +HE PI+F++++++ N GI G V+EY+ E+Q  LGW CS VT +Q+   T+ FN FI+ M  C  N +T +  + C CDIGI GW     RY +VD LPPF  D +RV   +S ++ S    FFL TFD  SW  I ++  +FT+ KLLD RFA  V++ + P +  S + R    +   P LYR  +A  S V + M+                                    MTASLVQE+ITS + S EDFRSC+IPP  VC   GGA++ +WN +IA  N CH G   +  S  +  Y+    G C++ I L+S     +    CG+  LL + L TSGLS+V+PKGSNLT AMS AT+ +   LS PS  +E + R   KC  + +S L  RKL LFF+LAFS C A +  M+L ++    +SA +++  + V+   S+
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQH-QNTSGFNAFIEQMHECTTNQSTGVSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFA--VAEPYTPLSGVSRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSN-CHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLL--LSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKKSANKRAIGRSVDSKSSK 439          
BLAST of Gcaud8424.t1 vs. uniprot
Match: R7Q540_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 117 bits (293), Expect = 6.180e-27
Identity = 69/190 (36.32%), Postives = 107/190 (56.32%), Query Frame = 0
Query:  226 KAMITHMTASLVQEQITSEFRSVEDFRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYEDAIRGLCRYGILLDSTARLAVNGLYCGRFLLS-DNLLTSGLSLVLPKGSNLTRAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAFSCCGAYILAMILKN 414
            +A+    +A+LVQ+ ++S +R ++D ++C + P  VC+P GGAID +W ++I   N CHK +        D  ++ +   C Y + L S+        YCGR L++ +  L +GLS VLP+GSN+T  +S  T+ +T+    P+ ERY R   KC  E +  L + KL  FF +AFS C    L MIL +
Sbjct:    3 RAISITCSAALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGK-NACHKEKPVYFSRYKDGIDNLLTKKCLYMLTLSSSGNELTQREYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKCP-EQNLTLNVEKLRFFFYMAFSACLFIFLEMILDS 190          
The following BLAST results are available for this feature:
BLAST of Gcaud8424.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IUK7_9FLOR4.140e-12044.17Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
A0A2V3IME4_9FLOR4.140e-11541.21Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD4_9FLOR3.510e-10642.11Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMD5_9FLOR2.000e-8539.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q540_CHOCR6.180e-2736.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 15..157
e-value: 8.4E-6
score: 27.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 413..478
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 176..391
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 392..412
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..175
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 29..363
NoneNo IPR availableTMHMMTMhelixcoord: 394..416
NoneNo IPR availableTMHMMTMhelixcoord: 154..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_248_length_34309_cov_4.396809contigNODE_248_length_34309_cov_4.396809:2110..4006 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8424.t1Gcaud8424.t1Gracilaria caudata M_176_S67 malemRNANODE_248_length_34309_cov_4.396809 2110..4006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8424.t1 ID=Gcaud8424.t1|Name=Gcaud8424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=479bp
MHRTLWVLSAILSVSAAVEIANALTGTSLRCCVVHEPPIAFLDEKEYVNG
GISGVVAEYLREMQALLGWNCSEVTPYQYGSGTTAFNNFIDMMENCAVNG
TTRIDDQCQCDIGISGWLPTAGRYDRVDLLPPFAQDGFRVIFDISVSNTS
INSLFFLTTFDVASWACIFSIILLFTICKLLDHRFAPFVSQRHPQASDSY
LSRLFRGIQNKPLLYRFPRAFLSVFKAMITHMTASLVQEQITSEFRSVED
FRSCRIPPEVVCIPDGGAIDTYWNHSIAAGNECHKGRSPRRGSLADSYED
AIRGLCRYGILLDSTARLAVNGLYCGRFLLSDNLLTSGLSLVLPKGSNLT
RAMSIATLKITEELSPPSVERYFRNIDKCNVETSSILPLRKLVLFFVLAF
SCCGAYILAMILKNMLRRDRSAKRQSAPKLVEESLSREYTILKLGNLARS
LSYLSDDRSALGDVSTQQKRREVHDWLL*
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