Gcaud8383.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8383.t1
Unique NameGcaud8383.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Homology
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR)

HSP 1 Score: 303 bits (776), Expect = 8.560e-103
Identity = 156/197 (79.19%), Postives = 177/197 (89.85%), Query Frame = 0
Query:    1 MNAFVSSFYAVG-SSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLT 196
            MNAFVSSF   G  +AFAGAA  APR QSR TVTMVASKAIPFL+APPKLDGTLVGD GFDPLYLS+YINLDYARAGELKNGRIAMLA LG++VQEFVHLPGPMFQE NP++AIY VP+ GW+QILAFI+++EL TFKATFE+GAD GFDPL +GKKG+++EL+LKELKNARLAMIA +GFI+Q IVTGKPI AQL+
Sbjct:    1 MNAFVSSFVPAGVRTAFAGAA--APRVQSRSTVTMVASKAIPFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYARAGELKNGRIAMLACLGMMVQEFVHLPGPMFQEPNPLRAIYTVPIAGWVQILAFITIVELITFKATFETGADYGFDPLGMGKKGNLEELQLKELKNARLAMIASIGFIMQIIVTGKPIFAQLS 195          
BLAST of Gcaud8383.t1 vs. uniprot
Match: R7QQX2_CHOCR (Light-harvesting complex I polypeptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQX2_CHOCR)

HSP 1 Score: 284 bits (727), Expect = 2.750e-95
Identity = 146/197 (74.11%), Postives = 169/197 (85.79%), Query Frame = 0
Query:    1 MNAFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTS 197
            M AFVSSF A   S F+ AAL AP   +RP VTMVAS+AIPFLEAP KLDG+ +GD GFDPLYLSDY++ DYA AGELKNGR+AMLAT+G+LVQEFVHLP PMF E+NPIKAIYAVPVEGW+QIL  I++IELATFK T+ESGADLGFDPL +G KG+++EL+LKELKN RLAM+A +GFI QTI TGKPIIAQLT+
Sbjct:    1 MFAFVSSFTAFRPS-FSAAALSAPSTSARPAVTMVASRAIPFLEAPSKLDGSRIGDSGFDPLYLSDYLDQDYAAAGELKNGRVAMLATVGMLVQEFVHLPNPMFAEANPIKAIYAVPVEGWVQILVAITIIELATFKKTYESGADLGFDPLGMGSKGNMEELKLKELKNGRLAMLASIGFIFQTITTGKPIIAQLTT 196          
BLAST of Gcaud8383.t1 vs. uniprot
Match: Q7XYZ2_GRIJA (Light-harvesting complex I polypeptide (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYZ2_GRIJA)

HSP 1 Score: 231 bits (588), Expect = 1.370e-74
Identity = 113/166 (68.07%), Postives = 136/166 (81.93%), Query Frame = 0
Query:   32 VTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTS 197
            V M AS+++PFLE P KLDGT VGD GFDPLYLSDYI+LDYA A E+K+GRI MLATLG+LVQE VHLP   F E NP+KAIYAVP+EGW+QI+  I ++ELA+FKAT+E+GADLGFDP+ LG    I+EL+LKE+KN RLA+IA  GFI Q +VTGKPI+AQL  
Sbjct:    1 VRMAASESVPFLEKPSKLDGTRVGDTGFDPLYLSDYIDLDYAAAAEIKHGRICMLATLGMLVQEVVHLPNAAFSEPNPLKAIYAVPIEGWVQIITVICLVELASFKATYETGADLGFDPMGLGTPDKIEELKLKEVKNGRLAIIACTGFIFQILVTGKPILAQLNG 166          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.640e-69
Identity = 120/199 (60.30%), Postives = 147/199 (73.87%), Query Frame = 0
Query:    3 AFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFE--SGADLGFDPLSLGKKGDIKELELK-ELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF 198
            AFVS   ++GS AFAG AL   RA+S   V M  S AIPFLEAP KLDG++VGD+GFDPLYLS+ INL+Y+RA ELK+GRI MLA LG +VQE VHLPGP FQESNPI AI  VPV GW QILAFIS IE+ATFK+ ++  +  DLGFDPL L K    K+   + E+ + R AMI F GF++Q +VTG+PI+ Q+ +F
Sbjct:   14 AFVSGV-SIGSRAFAGKALTTRRARSSNVVMMAKSAAIPFLEAPDKLDGSMVGDQGFDPLYLSENINLEYSRAAELKHGRICMLAVLGFVVQELVHLPGPQFQESNPILAIGRVPVAGWAQILAFISFIEMATFKSQYDLSTPGDLGFDPLKLAKDSSTKKKMAEYEIAHCRAAMIGFAGFLMQILVTGRPIVDQMVNF 211          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A7S1TMR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMR6_9RHOD)

HSP 1 Score: 204 bits (520), Expect = 8.360e-64
Identity = 103/174 (59.20%), Postives = 130/174 (74.71%), Query Frame = 0
Query:   28 SRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGA---DLGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF 198
            S   V M  S+AIPFLE P  LDG+L GD GFDPL LS Y+NL Y RA ELK+GRI MLATLG +VQE V LPGPMFQE + ++AIY VP+  W+QI+AFIS+IEL TF++ ++  +   D GFDPL+LGK G I+  +L E+KN RLAMIAF+GF+ Q +VTG+ +I QL +F
Sbjct:   24 SATVVRMAKSQAIPFLEKPDTLDGSLAGDAGFDPLRLSKYLNLKYLRAAELKHGRICMLATLGWVVQEIVRLPGPMFQEKHALQAIYKVPLASWVQIIAFISIIELVTFRSNYDDSSAPGDYGFDPLNLGKSGVIERYQLNEIKNGRLAMIAFMGFLFQQLVTGQGVIEQLANF 197          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A7S2ZL17_9RHOD (Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S2ZL17_9RHOD)

HSP 1 Score: 201 bits (511), Expect = 9.880e-62
Identity = 110/196 (56.12%), Postives = 137/196 (69.90%), Query Frame = 0
Query:    3 AFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESG--ADLGFDPLSLGKKGD-IKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQL 195
            AFVS   ++G+S FAG A+ A  A+S  TV M  SK+IPFLE P  L+G+L GD GFDPLYLSD INL+YARA ELK+GRI MLA LGI+VQE +HLPGP F ESNPI AIY +PVEGW QI+AFI  +ELATFK  ++     +  FDPL L K     K+ E  E+ + R AM+ + GF  Q +VTG+ ++ QL
Sbjct:   51 AFVSGV-SLGTSRFAGQAVAAKTARSTGTVMMAMSKSIPFLECPKNLNGSLPGDVGFDPLYLSDNINLNYARASELKHGRICMLAVLGIVVQEVIHLPGPYFSESNPIAAIYKIPVEGWFQIIAFICAVELATFKKNYDGSPPGNYEFDPLKLAKDSTTFKKYEENEIVHCRAAMVGWFGFFAQQLVTGQNVLEQL 245          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A7S0BCB3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BCB3_9RHOD)

HSP 1 Score: 199 bits (505), Expect = 1.730e-61
Identity = 107/196 (54.59%), Postives = 137/196 (69.90%), Query Frame = 0
Query:    3 AFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESG--ADLGFDPLSLGKK-GDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQL 195
            AFVS   ++G+S FAG A+   RA+S  TV M  SK+IPFLE P  LDG L GD GFDPLYLSD INL YARA ELK+GRI MLA LG +VQ  +HLPGP F E++PI AIY +P+EGW QI+AFIS IELATFK  ++     D  FDPL+L K    +++ +  E+ + R AM+ + GF+ Q +VTG+ ++ QL
Sbjct:    2 AFVSGV-SLGTSRFAGQAVSVRRARSSGTVMMAMSKSIPFLECPKNLDGRLPGDVGFDPLYLSDNINLQYARASELKHGRICMLAVLGFVVQGIIHLPGPYFSETSPIAAIYKIPIEGWFQIIAFISAIELATFKKNYDGSPPGDYNFDPLNLAKDTATLEKYKENEIVHCRAAMVGWFGFLAQQLVTGQSVVEQL 196          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A1X6PAM8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAM8_PORUM)

HSP 1 Score: 192 bits (488), Expect = 5.960e-59
Identity = 110/200 (55.00%), Postives = 132/200 (66.00%), Query Frame = 0
Query:    1 MNAFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESG---ADLGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTS 197
            M AFV     +  SAFAG+A+    A +  TVTM ASKAIPFLEAP  LD +  G  GFDPLYLS+Y+N DYA  GELKNGR+AMLA LG LV EFVHLP   F     + AIY +P+ GW+QIL FIS++ELATFK  ++      DLGFDPL +    D   + LKE+KN RLAMI  +G I Q +V  KP I+QLT 
Sbjct:    1 MYAFVGVAPLMSRSAFAGSAVSKAPAPAAATVTMKASKAIPFLEAPQGLDESKAGYVGFDPLYLSNYLNQDYAAQGELKNGRVAMLACLGWLVAEFVHLPAKQFSNPVALDAIYQIPLVGWVQILTFISLVELATFKMMYDPSRRAGDLGFDPLKM----DSPAMRLKEVKNGRLAMIGIIGLIFQQLVFHKPTISQLTQ 196          
BLAST of Gcaud8383.t1 vs. uniprot
Match: A0A7S1TAP5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TAP5_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 4.990e-58
Identity = 96/174 (55.17%), Postives = 131/174 (75.29%), Query Frame = 0
Query:   29 RPTVTMVA-SKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGAD---LGFDPLSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF 198
            +P+++M+A S+++PFLEAP KL+G+  GD GFDPLYLSDY+N  Y RA E+K+GRI MLA LG +VQE V LPG M  E++ I AIY  PVE W QI+AF+S+ ELATFKAT++S +     GFDP+ LGK  D   ++L E+KN RLAM+ F+G ++Q +VTG+ ++ QLT+F
Sbjct:   25 KPSISMMAKSESVPFLEAPSKLNGSAPGDIGFDPLYLSDYLNFHYCRASEIKHGRICMLACLGWIVQELVQLPGAMHSETHAIAAIYKAPVEAWWQIIAFMSLCELATFKATYDSSSTPGAYGFDPMGLGKS-DFSRMQLAEIKNGRLAMMGFIGMLLQQLVTGQGVVEQLTNF 197          
BLAST of Gcaud8383.t1 vs. uniprot
Match: M2X4C9_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X4C9_GALSU)

HSP 1 Score: 188 bits (478), Expect = 2.590e-57
Identity = 94/167 (56.29%), Postives = 122/167 (73.05%), Query Frame = 0
Query:   35 VASKAIPFLEAPPKLDGTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLPGPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFE---SGADLGFDPLSLGKKGDIKE-LELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTS 197
            V S+A+PFLEAP KLDG + GD GFDPLY+SD +NLDY RA E+K+ R+AMLA LG + QEF HLPG +F E + + AI+ VP+EGWIQI+ FIS++E+ATF+ TF       D GFDPL L K   ++   +  E++N RLAMIA +GFIVQ +VTGK ++ QL S
Sbjct:   39 VKSRALPFLEAPKKLDGKIPGDAGFDPLYISDNMNLDYLRASEIKHCRVAMLAALGYITQEFFHLPGDVFNEKHALAAIHKVPIEGWIQIILFISLVEIATFRTTFSFDREPGDFGFDPLGLAKSPQLRRRYQESEIRNGRLAMIAVIGFIVQELVTGKSVVEQLQS 205          
The following BLAST results are available for this feature:
BLAST of Gcaud8383.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3F8_9FLOR8.560e-10379.19Chlorophyll a-b binding protein 7, chloroplastic n... [more]
R7QQX2_CHOCR2.750e-9574.11Light-harvesting complex I polypeptide n=1 Tax=Cho... [more]
Q7XYZ2_GRIJA1.370e-7468.07Light-harvesting complex I polypeptide (Fragment) ... [more]
A0A7S2UB14_9STRA1.640e-6960.30Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S1TMR6_9RHOD8.360e-6459.20Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S2ZL17_9RHOD9.880e-6256.12Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 ... [more]
A0A7S0BCB3_9RHOD1.730e-6154.59Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PAM8_PORUM5.960e-5955.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1TAP5_9RHOD4.990e-5855.17Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2X4C9_GALSU2.590e-5756.29Light-harvesting complex protein n=1 Tax=Galdieria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 34..198
e-value: 2.6E-41
score: 143.7
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 13..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..198
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 33..197
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 46..184
e-value: 1.7E-33
score: 116.4
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 13..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:7942..8538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1Gcaud8383.t1Gracilaria caudata M_176_S67 malemRNANODE_406_length_26511_cov_4.568963 7942..8538 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MNAFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLD
GTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLP
GPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDP
LSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln