Gcaud8383.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8383.t1
Unique NameGcaud8383.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:7942..8538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707805.1
Preferred nameLhcr9
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08916,ko:K08917
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue1.12e-58
EggNOG OGs2CY6H@1|root,2S4NG@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8383Gcaud8383Gracilaria caudata M_176_S67 malegeneNODE_406_length_26511_cov_4.568963 7942..8538 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1.start1Gcaud8383.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_406_length_26511_cov_4.568963 7942..7944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1.CDS1Gcaud8383.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 7942..8538 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1.exon1Gcaud8383.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 7942..8538 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1.stop1Gcaud8383.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_406_length_26511_cov_4.568963 8536..8538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8383.t1Gcaud8383.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_406_length_26511_cov_4.568963 7942..8538 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MNAFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLD
GTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLP
GPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDP
LSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF*
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spliced messenger RNA

>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:7942..8538+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCGTTTGTCTCCTCCTTCTACGCCGTCGGCAGCTCGGCCTTTGC
GGGTGCTGCACTCGTGGCCCCTCGCGCTCAATCGCGCCCCACTGTCACCA
TGGTCGCCAGCAAGGCCATTCCCTTCTTGGAGGCTCCGCCCAAGCTTGAC
GGAACTCTTGTCGGCGATGAAGGGTTCGACCCGTTGTACCTGTCCGACTA
CATCAACCTCGACTACGCTCGTGCTGGTGAGCTCAAGAACGGTCGCATTG
CAATGCTCGCCACGCTTGGTATCTTGGTTCAGGAGTTTGTCCATCTCCCG
GGACCCATGTTCCAAGAGTCCAACCCCATCAAGGCTATCTACGCCGTGCC
GGTTGAGGGCTGGATTCAAATACTCGCGTTCATCAGTGTTATCGAACTTG
CAACCTTCAAGGCCACTTTCGAGTCGGGAGCTGATCTTGGTTTCGATCCG
CTTAGTCTTGGAAAGAAGGGTGACATCAAAGAACTTGAACTTAAGGAACT
CAAGAACGCACGGTTGGCTATGATTGCCTTCCTCGGCTTCATCGTGCAGA
CTATTGTCACAGGCAAGCCCATCATTGCTCAGCTCACTTCATTCTAA
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protein sequence of Gcaud8383.t1

>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MNAFVSSFYAVGSSAFAGAALVAPRAQSRPTVTMVASKAIPFLEAPPKLD
GTLVGDEGFDPLYLSDYINLDYARAGELKNGRIAMLATLGILVQEFVHLP
GPMFQESNPIKAIYAVPVEGWIQILAFISVIELATFKATFESGADLGFDP
LSLGKKGDIKELELKELKNARLAMIAFLGFIVQTIVTGKPIIAQLTSF*
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mRNA from alignment at NODE_406_length_26511_cov_4.568963:7942..8538+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:7942..8538+ (Gracilaria caudata M_176_S67 male)
ATGAACGCGTTTGTCTCCTCCTTCTACGCCGTCGGCAGCTCGGCCTTTGC
GGGTGCTGCACTCGTGGCCCCTCGCGCTCAATCGCGCCCCACTGTCACCA
TGGTCGCCAGCAAGGCCATTCCCTTCTTGGAGGCTCCGCCCAAGCTTGAC
GGAACTCTTGTCGGCGATGAAGGGTTCGACCCGTTGTACCTGTCCGACTA
CATCAACCTCGACTACGCTCGTGCTGGTGAGCTCAAGAACGGTCGCATTG
CAATGCTCGCCACGCTTGGTATCTTGGTTCAGGAGTTTGTCCATCTCCCG
GGACCCATGTTCCAAGAGTCCAACCCCATCAAGGCTATCTACGCCGTGCC
GGTTGAGGGCTGGATTCAAATACTCGCGTTCATCAGTGTTATCGAACTTG
CAACCTTCAAGGCCACTTTCGAGTCGGGAGCTGATCTTGGTTTCGATCCG
CTTAGTCTTGGAAAGAAGGGTGACATCAAAGAACTTGAACTTAAGGAACT
CAAGAACGCACGGTTGGCTATGATTGCCTTCCTCGGCTTCATCGTGCAGA
CTATTGTCACAGGCAAGCCCATCATTGCTCAGCTCACTTCATTCTAA
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Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:7942..8538+

>Gcaud8383.t1 ID=Gcaud8383.t1|Name=Gcaud8383.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:7942..8538+ (Gracilaria caudata M_176_S67 male)
ATGAACGCGTTTGTCTCCTCCTTCTACGCCGTCGGCAGCTCGGCCTTTGC
GGGTGCTGCACTCGTGGCCCCTCGCGCTCAATCGCGCCCCACTGTCACCA
TGGTCGCCAGCAAGGCCATTCCCTTCTTGGAGGCTCCGCCCAAGCTTGAC
GGAACTCTTGTCGGCGATGAAGGGTTCGACCCGTTGTACCTGTCCGACTA
CATCAACCTCGACTACGCTCGTGCTGGTGAGCTCAAGAACGGTCGCATTG
CAATGCTCGCCACGCTTGGTATCTTGGTTCAGGAGTTTGTCCATCTCCCG
GGACCCATGTTCCAAGAGTCCAACCCCATCAAGGCTATCTACGCCGTGCC
GGTTGAGGGCTGGATTCAAATACTCGCGTTCATCAGTGTTATCGAACTTG
CAACCTTCAAGGCCACTTTCGAGTCGGGAGCTGATCTTGGTTTCGATCCG
CTTAGTCTTGGAAAGAAGGGTGACATCAAAGAACTTGAACTTAAGGAACT
CAAGAACGCACGGTTGGCTATGATTGCCTTCCTCGGCTTCATCGTGCAGA
CTATTGTCACAGGCAAGCCCATCATTGCTCAGCTCACTTCATTCTAA
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