Gcaud830.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud830.t1
Unique NameGcaud830.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length392
Homology
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BLAST of Gcaud830.t1 vs. uniprot
Match: A0A2V3J5T4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5T4_9FLOR)

HSP 1 Score: 483 bits (1243), Expect = 1.210e-166
Identity = 250/382 (65.45%), Postives = 316/382 (82.72%), Query Frame = 0 
Query:    2 LKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEAKRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVVSEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFTLFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCYAAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGFTELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRARSLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDTDVECLSEGHTRTTRTERTRQGRKELIQMKCTPY 383
            LKGR+ KLR KQ +LE +K+KVGEA SWE+RQK+S  KEL RAKAE+EAKRQQI++L   AEK+R  I EMQ+  KS+N+K LE+QDKYLHPSLR++ V+E  +GGP+SEHLVNKT+E IIPE++ G+ G+ +VE + HH+SPIA+VFTLFCIYALAVSLVVTC+RY +IAHRIMTLRRMLFMADM  LA+WFLICVCYAAIL+DPLEAMAREHG++ MVVQ+LIMAGL+GNVVLRC+ALC++VS++ F EL+ +V+VAQHYY+AVWV IV+DE VKA L SY+ YA INGSLA++RARS+SRA+QTA  E  G TAGKW+ SW ++++EKGIQY+E+ LT+GIPS   D+EC++E    T   +R+   R E  + +  PY
Sbjct:   71 LKGRILKLRHKQADLEGRKKKVGEAMSWESRQKESRKKELQRAKAELEAKRQQIIVLGEEAEKMRAGIREMQDNLKSMNRKRLEVQDKYLHPSLRDIFVNEGTRGGPLSEHLVNKTVESIIPELEIGMHGIEDVEYRLHHSSPIASVFTLFCIYALAVSLVVTCLRYLVIAHRIMTLRRMLFMADMCFLAMWFLICVCYAAILVDPLEAMAREHGALAMVVQVLIMAGLLGNVVLRCLALCASVSAQTFIELVAIVYVAQHYYEAVWVRIVMDEGVKARLLSYVTYAIINGSLAIHRARSVSRAIQTAHEELRGTTAGKWDQSWFKTQLEKGIQYIENALTIGIPSTAADIECVAEAPRETHWPQRSTCRRAESPRTRFRPY 452
The following BLAST results are available for this feature:
BLAST of Gcaud830.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5T4_9FLOR1.210e-16665.45Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..89
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 206..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..205
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 148..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..297
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 217..241
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 274..278
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 253..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 242..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 171..181
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 298..391
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..147
NoneNo IPR availableTMHMMTMhelixcoord: 182..204
NoneNo IPR availableTMHMMTMhelixcoord: 282..299
NoneNo IPR availableTMHMMTMhelixcoord: 253..272
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 148..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_490_length_23884_cov_4.522254contigNODE_490_length_23884_cov_4.522254:2..1175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud830.t1Gcaud830.t1Gracilaria caudata M_176_S67 malemRNANODE_490_length_23884_cov_4.522254 2..1175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
XLKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEA
KRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVV
SEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFT
LFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCY
AAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGF
TELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRAR
SLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDT
DVECLSEGHTRTTRTERTRQGRKELIQMKCTPYSKRRDPRA*
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