Gcaud830.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud830.t1
Unique Name	Gcaud830.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	392

Homology

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BLAST of Gcaud830.t1 vs. uniprot
Match: A0A2V3J5T4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5T4_9FLOR)

HSP 1 Score: 483 bits (1243), Expect = 1.210e-166
Identity = 250/382 (65.45%), Postives = 316/382 (82.72%), Query Frame = 0

Query:    2 LKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEAKRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVVSEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFTLFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCYAAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGFTELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRARSLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDTDVECLSEGHTRTTRTERTRQGRKELIQMKCTPY 383
            LKGR+ KLR KQ +LE +K+KVGEA SWE+RQK+S  KEL RAKAE+EAKRQQI++L   AEK+R  I EMQ+  KS+N+K LE+QDKYLHPSLR++ V+E  +GGP+SEHLVNKT+E IIPE++ G+ G+ +VE + HH+SPIA+VFTLFCIYALAVSLVVTC+RY +IAHRIMTLRRMLFMADM  LA+WFLICVCYAAIL+DPLEAMAREHG++ MVVQ+LIMAGL+GNVVLRC+ALC++VS++ F EL+ +V+VAQHYY+AVWV IV+DE VKA L SY+ YA INGSLA++RARS+SRA+QTA  E  G TAGKW+ SW ++++EKGIQY+E+ LT+GIPS   D+EC++E    T   +R+   R E  + +  PY
Sbjct:   71 LKGRILKLRHKQADLEGRKKKVGEAMSWESRQKESRKKELQRAKAELEAKRQQIIVLGEEAEKMRAGIREMQDNLKSMNRKRLEVQDKYLHPSLRDIFVNEGTRGGPLSEHLVNKTVESIIPELEIGMHGIEDVEYRLHHSSPIASVFTLFCIYALAVSLVVTCLRYLVIAHRIMTLRRMLFMADMCFLAMWFLICVCYAAILVDPLEAMAREHGALAMVVQVLIMAGLLGNVVLRCLALCASVSAQTFIELVAIVYVAQHYYEAVWVRIVMDEGVKARLLSYVTYAIINGSLAIHRARSVSRAIQTAHEELRGTTAGKWDQSWFKTQLEKGIQYIENALTIGIPSTAADIECVAEAPRETHWPQRSTCRRAESPRTRFRPY 452

The following BLAST results are available for this feature:

BLAST of Gcaud830.t1 vs. uniprot

BLAST of Gcaud830.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J5T4_9FLOR	1.210e-166	65.45	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..89
None	No IPR available	COILS	Coil	Coil	coord: 6..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 206..216
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 182..205
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 148..170
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 279..297
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 217..241
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 274..278
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 253..273
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 242..252
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 171..181
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 298..391
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..147
None	No IPR available	TMHMM	TMhelix		coord: 182..204
None	No IPR available	TMHMM	TMhelix		coord: 282..299
None	No IPR available	TMHMM	TMhelix		coord: 253..272
None	No IPR available	TMHMM	TMhelix		coord: 219..241
None	No IPR available	TMHMM	TMhelix		coord: 148..170

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_490_length_23884_cov_4.522254	contig	NODE_490_length_23884_cov_4.522254:2..1175 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud830.t1	Gcaud830.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_490_length_23884_cov_4.522254 2..1175 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud830.t1 ID=Gcaud830.t1|Name=Gcaud830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=392bp
XLKGRVEKLRLKQENLENQKRKVGEARSWEARQKDSHIKELHRAKAEMEA
KRQQIVLLARHAEKLRTNIHEMQEKYKSLNKKSLELQDKYLHPSLRELVV
SEAAKGGPVSEHLVNKTMEEIIPEIKSGLRGLHEVENQFHHASPIANVFT
LFCIYALAVSLVVTCVRYTMIAHRIMTLRRMLFMADMSILAIWFLICVCY
AAILIDPLEAMAREHGSVTMVVQILIMAGLIGNVVLRCVALCSNVSSKGF
TELLLVVFVAQHYYQAVWVPIVLDERVKANLWSYLGYAAINGSLAVYRAR
SLSRAMQTAQAEFCGATAGKWENSWLRSRVEKGIQYLEDLLTLGIPSEDT
DVECLSEGHTRTTRTERTRQGRKELIQMKCTPYSKRRDPRA*