Gcaud8294.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8294.t1
Unique NameGcaud8294.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length168
Homology
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A2V3IVJ5_9FLOR (Clathrin heavy chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVJ5_9FLOR)

HSP 1 Score: 243 bits (620), Expect = 2.290e-71
Identity = 123/156 (78.85%), Postives = 140/156 (89.74%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M RSIDF +GEQPELLEDLLNVLAPRIDG+RAV +L+RARTR+F S+GCL FAVKYLEKIQSA VPEVNEALNE YLS  + + LR SV+EFKNFDQ+KLAK+LQ ++LLEFRRI+ YLL+ NGRYEQAIELA+KD+LYYDMIDAIAQSED ELAE
Sbjct: 1497 MYRSIDFYLGEQPELLEDLLNVLAPRIDGARAVNMLKRARTREFGSMGCLPFAVKYLEKIQSADVPEVNEALNEVYLSESSTAKLRRSVEEFKNFDQLKLAKKLQGHDLLEFRRIACYLLSRNGRYEQAIELARKDLLYYDMIDAIAQSEDPELAE 1652          
BLAST of Gcaud8294.t1 vs. uniprot
Match: R7QJX3_CHOCR (Clathrin heavy chain n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJX3_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 1.060e-63
Identity = 113/157 (71.97%), Postives = 132/157 (84.08%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAEL 157
            M RSIDF +GEQPELLEDLLNVLAPR+DGSRAV ILQRAR ++F  LGCL FAVKYLEKIQSA VPEVNEALN  Y++ GN   LR SV EFKNFDQ+ LA +L+++EL+E RRIS +L A NGR+E+AIE++KKDVLY DMI A+AQSED ELAE+
Sbjct: 1438 MYRSIDFYLGEQPELLEDLLNVLAPRVDGSRAVSILQRARQQEFGELGCLPFAVKYLEKIQSADVPEVNEALNAVYIAEGNFEKLRHSVDEFKNFDQLVLASKLESHELIEVRRISSHLYARNGRHEKAIEMSKKDVLYGDMIYAVAQSEDQELAEM 1594          
BLAST of Gcaud8294.t1 vs. uniprot
Match: R7QDY7_CHOCR (Clathrin heavy chain n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDY7_CHOCR)

HSP 1 Score: 159 bits (402), Expect = 4.760e-42
Identity = 77/156 (49.36%), Postives = 110/156 (70.51%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M +SI F + EQPELL DLL+VLAP+++ SR + IL+RA    F  LG L     YL K+Q ++VP+VN+ALN+  ++ G+   L +S+  + NFDQ  LA+RL+ +EL++ RRIS  L   NG+YEQAIE++K+D LY D ++++A SEDAEL E
Sbjct: 1079 MYKSIQFYIDEQPELLNDLLSVLAPKVESSRVISILRRAYADRFGDLGLLPLCKGYLLKVQESNVPDVNDALNDILIAEGSLDELETSIDSYDNFDQFVLARRLEKHELIQLRRISATLFRRNGKYEQAIEVSKRDKLYKDAVESVAASEDAELTE 1234          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A2V3J4K1_9FLOR (Clathrin heavy chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4K1_9FLOR)

HSP 1 Score: 157 bits (398), Expect = 1.670e-41
Identity = 77/156 (49.36%), Postives = 110/156 (70.51%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M ++I F + EQP LL DLL+VL+P+++ SR + IL+RA + +F  LG L     YL K+Q A+VP+VNEALN+  ++ G+   L +S+  + NFDQ  LA+RL+ N+LL+ RR +  L   NG+YEQAIE++KKD LY D I+++A SEDAEL E
Sbjct: 1429 MYKAIQFYIDEQPALLGDLLSVLSPKVEASRVISILRRAFSAEFGELGLLPLCKGYLLKVQDANVPDVNEALNDVLIAEGSLDELETSIDSYDNFDQFGLARRLEKNDLLQLRRTAALLFRRNGKYEQAIEVSKKDKLYRDAIESVAVSEDAELTE 1584          
BLAST of Gcaud8294.t1 vs. uniprot
Match: UPI001E1DF10E (LOW QUALITY PROTEIN: clathrin heavy chain 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF10E)

HSP 1 Score: 149 bits (377), Expect = 1.110e-38
Identity = 74/156 (47.44%), Postives = 107/156 (68.59%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M ++I F + EQP LL DLL+VLAP+++ SRA+ +L++A   +F  LG L     YL K+Q A+VP+VN ALN+  ++  +   L++S+  + NFDQ  LA+RL+ + LLE RR++  L   NG+YEQAI L+KKD +Y D I+A A S DAEL+E
Sbjct: 1423 MYKAIQFYIDEQPALLNDLLSVLAPKVESSRAIAVLRKAYGSEFGELGVLPMCKSYLLKVQDANVPDVNNALNDVLIAEESLDELQASMDAYDNFDQFALARRLERHSLLEMRRLASALFRRNGKYEQAISLSKKDKMYKDAIEACAASGDAELSE 1578          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A388M0W2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M0W2_CHABU)

HSP 1 Score: 129 bits (324), Expect = 3.080e-33
Identity = 75/154 (48.70%), Postives = 97/154 (62.99%), Query Frame = 0
Query:    3 RSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            +SI F + E P+LL DLLNVL  RID SR V IL++A +        L     YL  +QS  V  VNEAL+E Y+   +   LR SV  + NF+QI LA++L+ +ELLEFRRI+GY+   NGR+EQ+I LAK D LY D +D  A S   +LAE
Sbjct:   93 KSITFYLEEHPDLLNDLLNVLKRRIDHSRVVDILRKANS--------LPLIKPYLIAVQSDDVIAVNEALHELYIEEEDYEKLRESVDHYVNFEQIGLAQQLEEHELLEFRRIAGYIYRKNGRWEQSIALAKMDNLYSDAMDTAAASGSRQLAE 238          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A5J4YZI2_PORPP (Clathrin heavy chain n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZI2_PORPP)

HSP 1 Score: 133 bits (334), Expect = 6.750e-33
Identity = 64/156 (41.03%), Postives = 104/156 (66.67%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M +++ F + E  EL+ DLL VLAP+ + +R +GIL+ +    +  LG L     +L K+Q   VPE+N A+N+  ++ G+   LR SV  F+NF+QI LA++L++NEL+ FRR+   L   N ++EQAIE++K+D L+ DMI++++ S+D E+ E
Sbjct: 1438 MYKAVRFYILEHAELVNDLLYVLAPKAEATRLMGILRGSYKDVYGELGILPLCKPFLNKVQEQDVPEINTAMNDILIAEGDVDALRDSVGTFENFEQIALARKLESNELIAFRRVGVELFRKNAKFEQAIEVSKRDRLWKDMIESVSASDDPEIME 1593          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A1X6NPR5_PORUM (Clathrin heavy chain n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NPR5_PORUM)

HSP 1 Score: 131 bits (330), Expect = 2.330e-32
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 0
Query:    1 MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            M R++ F + EQP  L +LL+VLAP+I+ SRAV +L+ AR      LG L  A  YL K+   +VP+VNEAL++  ++      L  +V    NFDQ+ LA+RLQ++ LL  RRI+  +   NG+YEQA+ +AK D LY + ID +A S DAEL E
Sbjct: 1441 MYRAVGFYLDEQPSRLNELLSVLAPKIESSRAVSLLRSARGDVLGPLGALPLAKAYLLKVSDDNVPDVNEALHDVLIAEEAVDELSEAVAAHDNFDQLALARRLQSHGLLAMRRIACTVFRRNGKYEQALAIAKADKLYKEAIDTVAASTDAELTE 1596          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A1S5WIU1_9VIRI (Clathrin heavy chain n=1 Tax=Chara australis TaxID=31298 RepID=A0A1S5WIU1_9VIRI)

HSP 1 Score: 129 bits (325), Expect = 1.090e-31
Identity = 75/154 (48.70%), Postives = 98/154 (63.64%), Query Frame = 0
Query:    3 RSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            +SI F + E P+LL DLLNVL  RID SR V IL++A +        L     YL  +QS  V  VNEAL+E Y+   +   LR SV  + NF+QI LA++L+ +ELLEFRRI+GY+   NGR+EQ+I LAK+D LY D +D  A S   +LAE
Sbjct: 1421 KSITFYLEEHPDLLNDLLNVLKRRIDHSRVVDILRKANS--------LPLIKPYLIAVQSDDVIAVNEALHELYIEEEDYGKLRESVDHYVNFEQIGLAQQLEEHELLEFRRIAGYIYRKNGRWEQSIALAKEDNLYRDAMDTAAASGSRKLAE 1566          
BLAST of Gcaud8294.t1 vs. uniprot
Match: A0A7S3JL12_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JL12_9SPIT)

HSP 1 Score: 123 bits (308), Expect = 2.620e-31
Identity = 62/154 (40.26%), Postives = 104/154 (67.53%), Query Frame = 0
Query:    3 RSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCLSFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKLAKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSEDAELAE 156
            R++ F + EQP LL DLL +LA +ID S+ V ++++A        G L+    +L+ +Q+ ++  VNEALNE Y+   +   LRSS+ E+ NF+ + LA++++N+ELLEFRRI+  +   N +++++IE++KKD L+ D I+ +A+S+D  LAE
Sbjct:    7 RALIFYLEEQPMLLNDLLKLLAMKIDLSKCVAVMRKA--------GHLTLIEPFLKSVQNQNLSAVNEALNEIYVENEDYEGLRSSITEYDNFESLSLAQQIENHELLEFRRIAAIIYRKNTKFDKSIEISKKDELWKDAIETVAESKDMRLAE 152          
The following BLAST results are available for this feature:
BLAST of Gcaud8294.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVJ5_9FLOR2.290e-7178.85Clathrin heavy chain n=1 Tax=Gracilariopsis chorda... [more]
R7QJX3_CHOCR1.060e-6371.97Clathrin heavy chain n=1 Tax=Chondrus crispus TaxI... [more]
R7QDY7_CHOCR4.760e-4249.36Clathrin heavy chain n=1 Tax=Chondrus crispus TaxI... [more]
A0A2V3J4K1_9FLOR1.670e-4149.36Clathrin heavy chain n=1 Tax=Gracilariopsis chorda... [more]
UPI001E1DF10E1.110e-3847.44LOW QUALITY PROTEIN: clathrin heavy chain 1-like n... [more]
A0A388M0W2_CHABU3.080e-3348.70Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5J4YZI2_PORPP6.750e-3341.03Clathrin heavy chain n=1 Tax=Porphyridium purpureu... [more]
A0A1X6NPR5_PORUM2.330e-3245.51Clathrin heavy chain n=1 Tax=Porphyra umbilicalis ... [more]
A0A1S5WIU1_9VIRI1.090e-3148.70Clathrin heavy chain n=1 Tax=Chara australis TaxID... [more]
A0A7S3JL12_9SPIT2.620e-3140.26Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..127
e-value: 1.9E-33
score: 117.7
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatPFAMPF00637Clathrincoord: 44..160
e-value: 1.6E-16
score: 60.5
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatPROSITEPS50236CHCRcoord: 20..168
score: 16.080584
NoneNo IPR availablePANTHERPTHR10292CLATHRIN HEAVY CHAIN RELATEDcoord: 3..158
NoneNo IPR availablePANTHERPTHR10292:SF1CLATHRIN HEAVY CHAINcoord: 3..158
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 3..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1536_length_9880_cov_4.761263contigNODE_1536_length_9880_cov_4.761263:180..683 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8294.t1Gcaud8294.t1Gracilaria caudata M_176_S67 malemRNANODE_1536_length_9880_cov_4.761263 180..683 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=168bp
MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCL
SFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKL
AKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSE
DAELAELTLHPQLCILCR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR000547Clathrin_H-chain/VPS_repeat
IPR016024ARM-type_fold