Gcaud8294.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8294.t1
Unique Name	Gcaud8294.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	168

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1536_length_9880_cov_4.761263	contig	NODE_1536_length_9880_cov_4.761263:180..683 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ13237
PFAMs	Clathrin,Clathrin-link,Clathrin_H_link,Clathrin_propel
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K04646
KEGG Pathway	ko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Evalue	4.81e-30
EggNOG OGs	KOG0985@1\|root,KOG0985@2759\|Eukaryota,37KUU@33090\|Viridiplantae,3GGGA@35493\|Streptophyta
Description	Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
COG category	U
BRITE	ko00000,ko00001,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8294	Gcaud8294	Gracilaria caudata M_176_S67 male	gene	NODE_1536_length_9880_cov_4.761263 180..683 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8294.t1.CDS1	Gcaud8294.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1536_length_9880_cov_4.761263 180..683 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8294.t1.exon1	Gcaud8294.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1536_length_9880_cov_4.761263 180..683 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8294.t1.start1	Gcaud8294.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1536_length_9880_cov_4.761263 681..683 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8294.t1	Gcaud8294.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1536_length_9880_cov_4.761263 180..683 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1536_length_9880_cov_4.761263:180..683-
coding sequence from alignment at NODE_1536_length_9880_cov_4.761263:180..683-

mRNA sequence

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=168bp
MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCL
SFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKL
AKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSE
DAELAELTLHPQLCILCR

spliced messenger RNA

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:180..683- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCGATCAATTGATTTCAATGTTGGTGAACAACCAGAACTTTTGGA
AGATCTTCTGAACGTCCTTGCTCCTCGAATAGATGGTTCTCGTGCAGTTG
GTATTCTTCAAAGAGCACGAACACGTGATTTTAGTTCATTGGGGTGTTTG
TCTTTTGCTGTGAAGTATCTTGAAAAGATACAATCCGCCCATGTTCCTGA
GGTCAACGAAGCTTTGAATGAATTCTATCTGTCGACGGGCAATAATAGTA
TTCTGCGAAGCTCTGTGAAGGAATTCAAGAACTTTGATCAAATCAAGCTC
GCTAAGCGACTCCAAAACAACGAACTTCTCGAGTTTAGACGCATTTCGGG
ATACTTGCTGGCTTTAAACGGTAGATATGAACAAGCAATCGAACTTGCGA
AGAAGGACGTCCTTTACTATGACATGATTGATGCTATCGCTCAGTCGGAG
GATGCAGAGTTGGCGGAGCTAACTCTGCATCCTCAACTCTGCATCCTATG
CCGA

protein sequence of Gcaud8294.t1

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=168bp
MCRSIDFNVGEQPELLEDLLNVLAPRIDGSRAVGILQRARTRDFSSLGCL
SFAVKYLEKIQSAHVPEVNEALNEFYLSTGNNSILRSSVKEFKNFDQIKL
AKRLQNNELLEFRRISGYLLALNGRYEQAIELAKKDVLYYDMIDAIAQSE
DAELAELTLHPQLCILCR

mRNA from alignment at NODE_1536_length_9880_cov_4.761263:180..683-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:180..683- (Gracilaria caudata M_176_S67 male)
ATGTGCCGATCAATTGATTTCAATGTTGGTGAACAACCAGAACTTTTGGA
AGATCTTCTGAACGTCCTTGCTCCTCGAATAGATGGTTCTCGTGCAGTTG
GTATTCTTCAAAGAGCACGAACACGTGATTTTAGTTCATTGGGGTGTTTG
TCTTTTGCTGTGAAGTATCTTGAAAAGATACAATCCGCCCATGTTCCTGA
GGTCAACGAAGCTTTGAATGAATTCTATCTGTCGACGGGCAATAATAGTA
TTCTGCGAAGCTCTGTGAAGGAATTCAAGAACTTTGATCAAATCAAGCTC
GCTAAGCGACTCCAAAACAACGAACTTCTCGAGTTTAGACGCATTTCGGG
ATACTTGCTGGCTTTAAACGGTAGATATGAACAAGCAATCGAACTTGCGA
AGAAGGACGTCCTTTACTATGACATGATTGATGCTATCGCTCAGTCGGAG
GATGCAGAGTTGGCGGAGCTAACTCTGCATCCTCAACTCTGCATCCTATG
CCGA

Coding sequence (CDS) from alignment at NODE_1536_length_9880_cov_4.761263:180..683-

>Gcaud8294.t1 ID=Gcaud8294.t1|Name=Gcaud8294.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=504bp|location=Sequence derived from alignment at NODE_1536_length_9880_cov_4.761263:180..683- (Gracilaria caudata M_176_S67 male)
ATGTGCCGATCAATTGATTTCAATGTTGGTGAACAACCAGAACTTTTGGA
AGATCTTCTGAACGTCCTTGCTCCTCGAATAGATGGTTCTCGTGCAGTTG
GTATTCTTCAAAGAGCACGAACACGTGATTTTAGTTCATTGGGGTGTTTG
TCTTTTGCTGTGAAGTATCTTGAAAAGATACAATCCGCCCATGTTCCTGA
GGTCAACGAAGCTTTGAATGAATTCTATCTGTCGACGGGCAATAATAGTA
TTCTGCGAAGCTCTGTGAAGGAATTCAAGAACTTTGATCAAATCAAGCTC
GCTAAGCGACTCCAAAACAACGAACTTCTCGAGTTTAGACGCATTTCGGG
ATACTTGCTGGCTTTAAACGGTAGATATGAACAAGCAATCGAACTTGCGA
AGAAGGACGTCCTTTACTATGACATGATTGATGCTATCGCTCAGTCGGAG
GATGCAGAGTTGGCGGAGCTAACTCTGCATCCTCAACTCTGCATCCTATG
CCGA