Gcaud7397.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7397.t1
Unique NameGcaud7397.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length238
Homology
BLAST of Gcaud7397.t1 vs. uniprot
Match: A0A2V3II53_9FLOR (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II53_9FLOR)

HSP 1 Score: 198 bits (504), Expect = 9.110e-61
Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 0
Query:   43 TGAHKPNGQRAWHQLLRHAIRASPPQTMNVAQLATIRATAAANLAHRPAVRSVNVRLFDEHALYFITEKRSDKAQALRNADGNTYAELHFWLSHVHIQLRLSGVLEVHGDDAMRRQWWQRMSARERTWFAWPNPGVSRDDAALAAAQPSDDVPDNFLIMRVVVDFVDVYDLETMPYMREHHTMSDKAWNIRKVNP 237
            T ++ PNG+R W++LL+ AI ASPPQ+MNVAQLAT+R T +  +++RP VRSVN+R  ++  L F ++KR+ KAQ L        AELHFWL  V++Q+RLSG L ++ D+ MR++WW  +   E+ WFAWP P   RD+AALAAA+PS+D+ D+F I+ + VDFVDV  L   P+ RE H +    W I+ VNP
Sbjct:    9 TPSYVPNGKRLWYELLQSAIAASPPQSMNVAQLATLRPTDSTPISNRPTVRSVNIRSINKDGLSFCSDKRAAKAQILSQVPE---AELHFWLPQVYLQMRLSGKLRINKDEKMRQEWWSSLRPHEKLWFAWPTPAAPRDEAALAAAKPSEDISDDFAILTLDVDFVDVSLLAPSPFARELHILRVNEWCIQAVNP 200          
BLAST of Gcaud7397.t1 vs. uniprot
Match: A0A6I5NUD1_9CYAN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NUD1_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.260e-8
Identity = 54/176 (30.68%), Postives = 83/176 (47.16%), Query Frame = 0
Query:   74 QLATIRATAAANLAHRPAVRSVNVRLF--DEHALYFITEKRSDKAQALRN-ADGNTYAELHFWLSHVHIQLRLSGVLE-VHGDDA------MRRQWWQRMSARERTWFAWPNPGVSRDDAALAAAQPSDDVP-DNFLIMRVVVDFVDVYDLETMPYMR-EHHTMSDKAWNIRKVNP 237
            QLAT+R         RPA R+V  R F    ++L F+T++RS K   +   ++G    EL ++ +    Q RL G +  +   D       +R   W++MSAR R  FAWP PG +R          S+  P   F ++    D VD  +L   P  R +++  +D +W   +VNP
Sbjct:   27 QLATVRPNG------RPANRTVVFRDFLAGTNSLLFVTDRRSAKVDQIAQWSEG----ELCWYFTQTREQFRLGGQMRLITAQDRDLEATQIRENAWEKMSARGRQQFAWPEPGQTRVQMGYDPTDLSESPPLSAFAVLIFEPDRVDHLELRGEPQNRHQYNRQADSSWQTFEVNP 192          
BLAST of Gcaud7397.t1 vs. uniprot
Match: A0A2E0AM83_9CYAN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Cyanobium sp. NAT70 TaxID=2024872 RepID=A0A2E0AM83_9CYAN)

HSP 1 Score: 55.1 bits (131), Expect = 9.190e-6
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 0
Query:  104 ALYFITEKRSDKAQALRNADGNTYAELHFWLSHVHIQLRLSGVL-EVHGDDA--MRRQWWQRMSARERTWFAWPNPGVS-RDDAALAAAQPSD-DVPDNFLIMRVVVDFVDVYDLETMPYMREHHTMSDKAWNIRKVNP 237
            AL   +++RSDK + L++      AE+ +   +   Q RL G++ ++  D+A  + RQ W  ++A  R  + WP+PG     DA       +D D P +FLI+R++++ V++ DL   P+ R     S   W  +++NP
Sbjct:   52 ALDLFSDQRSDKVEELQH---QPQAEICWLFPNARHQYRLRGLIHQLSVDEAXDICRQAWIALTASGRALWGWPSPGQPFHKDAEFPEEISADTDPPHHFLILRLMIERVELLDLSCHPHQRLLWCRSTD-WQEQRLNP 186          
The following BLAST results are available for this feature:
BLAST of Gcaud7397.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3II53_9FLOR9.110e-6149.74Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 T... [more]
A0A6I5NUD1_9CYAN1.260e-830.68Pyridoxamine 5'-phosphate oxidase n=1 Tax=Leptolyn... [more]
A0A2E0AM83_9CYAN9.190e-630.22Pyridoxamine 5'-phosphate oxidase n=1 Tax=Cyanobiu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012349FMN-binding split barrelGENE3D2.30.110.10coord: 50..237
e-value: 2.4E-32
score: 114.4
IPR024624Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domainPFAMPF12766Pyridox_oxase_2coord: 52..150
e-value: 2.9E-13
score: 50.3
IPR000659Pyridoxamine 5'-phosphate oxidasePANTHERPTHR10851PYRIDOXINE-5-PHOSPHATE OXIDASEcoord: 41..237
NoneNo IPR availableSUPERFAMILY50475FMN-binding split barrelcoord: 49..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2573_length_5268_cov_3.677999contigNODE_2573_length_5268_cov_3.677999:2862..4296 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7397.t1Gcaud7397.t1Gracilaria caudata M_176_S67 malemRNANODE_2573_length_5268_cov_3.677999 2862..4296 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
IAVASTPASYTLPSRRAAATPRTSNNCHERLHTRAEKEMEHTTGAHKPNG
QRAWHQLLRHAIRASPPQTMNVAQLATIRATAAANLAHRPAVRSVNVRLF
DEHALYFITEKRSDKAQALRNADGNTYAELHFWLSHVHIQLRLSGVLEVH
GDDAMRRQWWQRMSARERTWFAWPNPGVSRDDAALAAAQPSDDVPDNFLI
MRVVVDFVDVYDLETMPYMREHHTMSDKAWNIRKVNP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012349Split_barrel_FMN-bd
IPR024624Pyridox_Oxase_Alr4036_FMN-bd
IPR000659Pyridox_Oxase