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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 91464.S7335_2994 |
| PFAMs | Pyridox_oxase_2 |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG rclass | RC00048,RC00116 |
| KEGG ko | ko:K00275 |
| KEGG Reaction | R00277,R00278,R01710,R01711 |
| KEGG Pathway | ko00750,ko01100,ko01120,map00750,map01100,map01120 |
| KEGG Module | M00124 |
| Evalue | 4.88e-12 |
| EggNOG OGs | COG5135@1|root,COG5135@2|Bacteria,1G50T@1117|Cyanobacteria,1H0E8@1129|Synechococcus |
| EC | 1.4.3.5 |
| Description | Pyridoxamine 5'-phosphate oxidase |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7397.t1.stop1 | Gcaud7397.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2573_length_5268_cov_3.677999 4294..4296 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
IAVASTPASYTLPSRRAAATPRTSNNCHERLHTRAEKEMEHTTGAHKPNG
QRAWHQLLRHAIRASPPQTMNVAQLATIRATAAANLAHRPAVRSVNVRLF
DEHALYFITEKRSDKAQALRNADGNTYAELHFWLSHVHIQLRLSGVLEVH
GDDAMRRQWWQRMSARERTWFAWPNPGVSRDDAALAAAQPSDDVPDNFLI
MRVVVDFVDVYDLETMPYMREHHTMSDKAWNIRKVNP* back to topspliced messenger RNA >Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:2862..4296+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATTGCTGTCGCATCAACGCCTGCTTCGTATACGCTTCCCTCGCGTCGAGC
AGCTGCCACCCCGCGCACCTCAAACAATTGTCACGAGCGTCTGCACACGC
GTGCGGAAAAAGAAATGGAGCACACCACCGGCGCGCACAAGCCCAACGGG
CAACGAGCATGGCACCAGCTATTGCGCCACGCCATTCGCGCCTCCCCGCC
GCAAACCATGAACGTGGCGCAGTTAGCCACCATTCGAGCCACCGCTGCCG
CAAACCTCGCGCACCGTCCCGCGGTGCGCAGCGTCAACGTTCGTTTGTTC
GACGAGCACGCGCTGTACTTCATCACGGAGAAGCGCTCCGACAAGGCGCA
GGCGCTGCGAAACGCGGACGGAAACACGTACGCGGAGCTACATTTCTGGC
TGTCTCACGTTCACATTCAGCTGCGACTGTCGGGCGTTCTCGAGGTGCAT
GGCGACGATGCTATGCGCCGTCAGTGGTGGCAACGCATGTCGGCTCGCGA
ACGCACCTGGTTTGCGTGGCCGAATCCTGGCGTCAGTCGCGATGACGCCG
CTCTCGCCGCCGCGCAGCCCTCCGACGACGTGCCCGACAACTTCTTGATC
ATGCGCGTGGTGGTGGACTTTGTGGACGTGTACGACCTTGAAACCATGCC
GTACATGCGAGAACATCACACCATGAGTGACAAAGCGTGGAACATTCGCA
AGGTAAATCCATAG back to topprotein sequence of Gcaud7397.t1 >Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
IAVASTPASYTLPSRRAAATPRTSNNCHERLHTRAEKEMEHTTGAHKPNG
QRAWHQLLRHAIRASPPQTMNVAQLATIRATAAANLAHRPAVRSVNVRLF
DEHALYFITEKRSDKAQALRNADGNTYAELHFWLSHVHIQLRLSGVLEVH
GDDAMRRQWWQRMSARERTWFAWPNPGVSRDDAALAAAQPSDDVPDNFLI
MRVVVDFVDVYDLETMPYMREHHTMSDKAWNIRKVNP* back to topmRNA from alignment at NODE_2573_length_5268_cov_3.677999:2862..4296+ Legend: polypeptideCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1435bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:2862..4296+ (Gracilaria caudata M_176_S67 male)
ATTGCTGTCGCATCAACGGTAAGCATATCTTTTCATCGCCGCCTTGTTTG
CGCTTTCGCGCTTTAAGAGTGACGTGTGCTTGAATCTGAGTTTGCATTCG
TTGCGTTTGCtgccaagcgttgcaagcttgccaagcgttgcaagcttgcc
aagcgatgcaagcttgccaagcgATGCTCCGTGTCAAGCTCGCGCTGCTT
GTTCCCACAGCAACCACGCTACAAGGGTATCCTTATAACTGTTGTGACAG
CCTGCTTCGTGTTGCATTTCTTCAACAGCTTTTACTCCTTTCAGCGCACT
ACGCTTGGCGGCGGATGAGAGCGCGTAAACGTCGTACAGCGCCACTCGTA
CTGTGCTGTGTGCACAGCTCGCGCTCCGTAGTTTGCACTCACAAATGCAC
TACTGTGCCGTTTTGGCTCCGATCACTGCGCACCGTCGTCGCTGgtgtga
agttactacgaatatcgctgtctacgtctctctggctgtctggccggaca
tcctttatagcccagttgtGAAGCGGTGTGGGAATGGTATCGCGATCAAA
AACATAGTCGCTTCGCCTTCTAAGAGAACGGTGTTGAAAACAGACACACA
TCCGTCGGCACTCCTGCGAGGCGAGAGTGTTGTGCAGGTGACACCACACG
TTGGCGTCTCAGAGCTTGCACTCACAAGTGAATTGCACCACCGTTTTGCA
CAGCCCCCTGCGCGCACACACCCCATTGCGTATGATACGCGCGTATCAGA
TACGCTTCCCTCGCGTCGAGCAGCTGCCACCCCGCGCACCTCAAACAATT
GTCACGAGCGTCTGCACACGCGTGCGGAAAAAGAAATGGAGCACACCACC
GGCGCGCACAAGCCCAACGGGCAACGAGCATGGCACCAGCTATTGCGCCA
CGCCATTCGCGCCTCCCCGCCGCAAACCATGAACGTGGCGCAGTTAGCCA
CCATTCGAGCCACCGCTGCCGCAAACCTCGCGCACCGTCCCGCGGTGCGC
AGCGTCAACGTTCGTTTGTTCGACGAGCACGCGCTGTACTTCATCACGGA
GAAGCGCTCCGACAAGGCGCAGGCGCTGCGAAACGCGGACGGAAACACGT
ACGCGGAGCTACATTTCTGGCTGTCTCACGTTCACATTCAGCTGCGACTG
TCGGGCGTTCTCGAGGTGCATGGCGACGATGCTATGCGCCGTCAGTGGTG
GCAACGCATGTCGGCTCGCGAACGCACCTGGTTTGCGTGGCCGAATCCTG
GCGTCAGTCGCGATGACGCCGCTCTCGCCGCCGCGCAGCCCTCCGACGAC
GTGCCCGACAACTTCTTGATCATGCGCGTGGTGGTGGACTTTGTGGACGT
GTACGACCTTGAAACCATGCCGTACATGCGAGAACATCACACCATGAGTG
ACAAAGCGTGGAACATTCGCAAGGTAAATCCATAG back to topCoding sequence (CDS) from alignment at NODE_2573_length_5268_cov_3.677999:2862..4296+ >Gcaud7397.t1 ID=Gcaud7397.t1|Name=Gcaud7397.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:2862..4296+ (Gracilaria caudata M_176_S67 male)
ATTGCTGTCGCATCAACGCCTGCTTCGTATACGCTTCCCTCGCGTCGAGC
AGCTGCCACCCCGCGCACCTCAAACAATTGTCACGAGCGTCTGCACACGC
GTGCGGAAAAAGAAATGGAGCACACCACCGGCGCGCACAAGCCCAACGGG
CAACGAGCATGGCACCAGCTATTGCGCCACGCCATTCGCGCCTCCCCGCC
GCAAACCATGAACGTGGCGCAGTTAGCCACCATTCGAGCCACCGCTGCCG
CAAACCTCGCGCACCGTCCCGCGGTGCGCAGCGTCAACGTTCGTTTGTTC
GACGAGCACGCGCTGTACTTCATCACGGAGAAGCGCTCCGACAAGGCGCA
GGCGCTGCGAAACGCGGACGGAAACACGTACGCGGAGCTACATTTCTGGC
TGTCTCACGTTCACATTCAGCTGCGACTGTCGGGCGTTCTCGAGGTGCAT
GGCGACGATGCTATGCGCCGTCAGTGGTGGCAACGCATGTCGGCTCGCGA
ACGCACCTGGTTTGCGTGGCCGAATCCTGGCGTCAGTCGCGATGACGCCG
CTCTCGCCGCCGCGCAGCCCTCCGACGACGTGCCCGACAACTTCTTGATC
ATGCGCGTGGTGGTGGACTTTGTGGACGTGTACGACCTTGAAACCATGCC
GTACATGCGAGAACATCACACCATGAGTGACAAAGCGTGGAACATTCGCA
AGGTAAATCCATAG back to top
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