Gcaud3424.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud3424.t1
Unique Name	Gcaud3424.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	625

Homology

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BLAST of Gcaud3424.t1 vs. uniprot
Match: A0A2V3IQ57_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ57_9FLOR)

HSP 1 Score: 821 bits (2121), Expect = 6.420e-294
Identity = 390/599 (65.11%), Postives = 464/599 (77.46%), Query Frame = 0

Query:   29 SAMYTPDVPWRDAATFEYDLRISDEFNGNRLDLSKWDPHGKRNPDTNCPNWNGPPSTSQPQWSTFFATTTEPGGG-SAEKFYEVRGGKLILRTDSKPLEYFKQREYYCDANTFKCNHNDQIECHATDYNGNAFYKDAEKTQFAGVTHDKCKIEPYCIPHPEFVTGKPRVYSRLVGAHITSKRSFKYGFFEVEVQLGDSPAVAAVWMHDDQMVDGFCRFVKNTDPNSDRDRQLECPSAIRSRRWQEIDMLEAMNSVIHQERYVPNIHVFSGYKGEFTSETAVDNGDGNMGGGPIVVKQSLFNEKNPNFEDLTAQQRLANDWHFSSGSVHSLDAPWKSGRRRIGLYWSPKEIRFYVDGVEVLRARNTLVHQSMLFDFSYSYNVQWARETPSDEQVQQPFEIMYVRRWDVFTADGLDPPSSLPLNEKMTRFENHYGEQLLGMFNRFPANDDNTFSEVFQEEDSLVNVMXXXXXXXXXXXXXVNLPFRQVEQRNLALRMGEQDYLLGEKYINQTLYTVRQGQSLSRAGGIGNVRFSRLRDKLSSVQRRIALSYSSRFSAVTN--GKAALLADAETTVFEFANPQLNGAGWATTDGLGTDDSLS 624
            +A   P+VPWR +ATF+YD  +SDEF+   LD SKWDPHGKRNPDTNCPNWNGPPSTSQP+WSTFF TTT+P      EK Y VR GKL L    +PLEYF +REYYC+  TFKCNH++ I+C AT+YNG  FYKDA KT +AGVTHDKCKIEP+CIPHPE+VTGKPRVYSR+VGAH+TSK  FKYGFFEV VQ+G+SP+VAAVWMHDDQMV+G+CRF+ NTDP+   DR LECPS IRSRRWQEIDMLEAMNS  H++ Y+PNIH F+GYKGEFTSE A D+GDGNMGGGPI+VK SLFNE  P+F D+ A  R +NDWHFSSGSVH L+A W    R++G+YWSPKEIRFYVDG EV R RNTL+HQ ML D SYS+NVQWARET + +++++PF I YVRRWDV+T DGLDPPSSLP +EKMT F NHYGE LLGMF RFP NDD TFSEV  EED+L                    P  +++       +G+ DY+L E  +N+++++VRQG+   RAGG+GN RFS+ R KLS+ +R +ALSY+SRF+ V     +A ++ DAETTVFEFANP  NGAGWATTDGLGTD SLS
Sbjct:   20 TAAIRPNVPWRSSATFKYDRVVSDEFSLRVLDTSKWDPHGKRNPDTNCPNWNGPPSTSQPEWSTFFPTTTDPDTLLPTEKLYSVRNGKLTLYNGVRPLEYFTKREYYCNTTTFKCNHDNTIDCFATNYNGVPFYKDAAKTMYAGVTHDKCKIEPFCIPHPEYVTGKPRVYSRIVGAHLTSKTPFKYGFFEVAVQIGNSPSVAAVWMHDDQMVNGYCRFITNTDPSRSGDRVLECPSLIRSRRWQEIDMLEAMNSAFHKQLYIPNIHAFAGYKGEFTSEIAQDSGDGNMGGGPILVKSSLFNEPKPSFGDVPAADRKSNDWHFSSGSVHKLNAAWSDRPRKLGMYWSPKEIRFYVDGKEVRRIRNTLIHQPMLMDLSYSFNVQWARETATTQRIEEPFHIYYVRRWDVYTDDGLDPPSSLPFDEKMTTFGNHYGEDLLGMFERFPTNDDKTFSEVLPEEDTLSG------------------PSSRMQTGVAEFDLGDTDYMLSELQVNRSVFSVRQGRRQRRAGGVGNRRFSKARRKLSAQERLVALSYASRFAGVRRLGERAEVVPDAETTVFEFANPNANGAGWATTDGLGTDGSLS 600

The following BLAST results are available for this feature:

BLAST of Gcaud3424.t1 vs. uniprot

BLAST of Gcaud3424.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IQ57_9FLOR	6.420e-294	65.11	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.200		coord: 31..438 e-value: 1.1E-28 score: 102.4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..624
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 15..25
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 42..433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:27570..29444 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1	Gcaud3424.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_17_length_79749_cov_4.367006 27570..29444 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=625bp
MRIADPAIMFSPFRFVFATVLALSATVSSAMYTPDVPWRDAATFEYDLRI
SDEFNGNRLDLSKWDPHGKRNPDTNCPNWNGPPSTSQPQWSTFFATTTEP
GGGSAEKFYEVRGGKLILRTDSKPLEYFKQREYYCDANTFKCNHNDQIEC
HATDYNGNAFYKDAEKTQFAGVTHDKCKIEPYCIPHPEFVTGKPRVYSRL
VGAHITSKRSFKYGFFEVEVQLGDSPAVAAVWMHDDQMVDGFCRFVKNTD
PNSDRDRQLECPSAIRSRRWQEIDMLEAMNSVIHQERYVPNIHVFSGYKG
EFTSETAVDNGDGNMGGGPIVVKQSLFNEKNPNFEDLTAQQRLANDWHFS
SGSVHSLDAPWKSGRRRIGLYWSPKEIRFYVDGVEVLRARNTLVHQSMLF
DFSYSYNVQWARETPSDEQVQQPFEIMYVRRWDVFTADGLDPPSSLPLNE
KMTRFENHYGEQLLGMFNRFPANDDNTFSEVFQEEDSLVNVMDSMTNIQN
SFTNLVNLPFRQVEQRNLALRMGEQDYLLGEKYINQTLYTVRQGQSLSRA
GGIGNVRFSRLRDKLSSVQRRIALSYSSRFSAVTNGKAALLADAETTVFE
FANPQLNGAGWATTDGLGTDDSLS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013320	ConA-like_dom_sf