Gcaud3424.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3424.t1
Unique Name	Gcaud3424.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	625

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:27570..29444 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	411154.GFO_1728
PFAMs	Glyco_hydro_16
Max annot lvl	976\|Bacteroidetes
Evalue	7.26e-09
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria,4NVAB@976\|Bacteroidetes,1I7ZY@117743\|Flavobacteriia
Description	Glycosyl hydrolases family 16
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3424	Gcaud3424	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 27570..29444 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1.stop1	Gcaud3424.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 27570..27572 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1.CDS1	Gcaud3424.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 27570..29444 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1.exon1	Gcaud3424.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 27570..29444 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1.start1	Gcaud3424.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 29442..29444 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3424.t1	Gcaud3424.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 27570..29444 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:27570..29444-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:27570..29444-

mRNA sequence

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=625bp
MRIADPAIMFSPFRFVFATVLALSATVSSAMYTPDVPWRDAATFEYDLRI
SDEFNGNRLDLSKWDPHGKRNPDTNCPNWNGPPSTSQPQWSTFFATTTEP
GGGSAEKFYEVRGGKLILRTDSKPLEYFKQREYYCDANTFKCNHNDQIEC
HATDYNGNAFYKDAEKTQFAGVTHDKCKIEPYCIPHPEFVTGKPRVYSRL
VGAHITSKRSFKYGFFEVEVQLGDSPAVAAVWMHDDQMVDGFCRFVKNTD
PNSDRDRQLECPSAIRSRRWQEIDMLEAMNSVIHQERYVPNIHVFSGYKG
EFTSETAVDNGDGNMGGGPIVVKQSLFNEKNPNFEDLTAQQRLANDWHFS
SGSVHSLDAPWKSGRRRIGLYWSPKEIRFYVDGVEVLRARNTLVHQSMLF
DFSYSYNVQWARETPSDEQVQQPFEIMYVRRWDVFTADGLDPPSSLPLNE
KMTRFENHYGEQLLGMFNRFPANDDNTFSEVFQEEDSLVNVMDSMTNIQN
SFTNLVNLPFRQVEQRNLALRMGEQDYLLGEKYINQTLYTVRQGQSLSRA
GGIGNVRFSRLRDKLSSVQRRIALSYSSRFSAVTNGKAALLADAETTVFE
FANPQLNGAGWATTDGLGTDDSLS*

spliced messenger RNA

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:27570..29444- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATCGCAGATCCTGCAATCATGTTCTCCCCATTTCGCTTTGTCTT
TGCCACCGTGCTGGCACTCTCAGCCACGGTCTCATCCGCAATGTACACAC
CAGATGTGCCGTGGCGTGACGCCGCCACATTCGAGTACGATCTCAGAATA
TCAGACGAGTTCAATGGCAATCGCCTGGACCTATCGAAATGGGATCCGCA
CGGAAAGCGAAACCCAGACACAAATTGCCCGAATTGGAACGGGCCTCCTT
CCACTTCTCAACCCCAATGGTCAACCTTTTTCGCCACAACCACTGAACCG
GGTGGTGGCTCCGCAGAGAAGTTCTACGAAGTACGAGGTGGTAAACTCAT
TCTTCGCACAGACAGCAAGCCTCTTGAGTACTTTAAGCAACGTGAGTATT
ACTGTGATGCAAATACGTTCAAATGCAATCACAACGACCAGATTGAATGT
CACGCAACCGATTACAACGGAAACGCGTTTTACAAAGACGCTGAAAAGAC
CCAGTTTGCTGGCGTAACGCACGACAAGTGCAAGATTGAGCCGTACTGCA
TTCCACATCCTGAGTTTGTAACGGGCAAGCCACGCGTGTACTCCCGTTTG
GTGGGCGCGCACATCACATCGAAACGAAGCTTCAAGTATGGCTTCTTCGA
GGTCGAAGTACAGCTTGGAGATTCTCCCGCTGTGGCAGCAGTATGGATGC
ACGACGACCAAATGGTGGACGGCTTCTGTCGTTTCGTGAAGAACACTGAT
CCTAATAGCGATCGGGATCGGCAGTTAGAATGCCCCAGCGCCATTCGGTC
TCGAAGATGGCAGGAGATTGATATGTTAGAAGCCATGAACAGTGTCATCC
ATCAAGAGCGTTACGTTCCAAACATTCATGTGTTCTCTGGGTACAAGGGA
GAATTCACGAGTGAGACGGCGGTGGATAATGGCGATGGAAACATGGGAGG
TGGGCCGATTGTGGTGAAACAATCGTTGTTCAACGAAAAGAATCCCAACT
TTGAAGATTTGACAGCGCAACAGCGACTGGCAAACGACTGGCACTTTAGC
TCGGGTTCGGTGCATTCGTTGGATGCGCCATGGAAATCAGGACGGCGACG
CATCGGACTGTATTGGTCACCGAAGGAGATTCGGTTCTACGTGGATGGGG
TGGAGGTACTTCGCGCTCGTAACACGCTGGTTCACCAATCGATGTTGTTC
GACTTTTCATACTCGTACAACGTACAATGGGCGCGAGAGACTCCAAGTGA
CGAACAGGTGCAGCAACCGTTCGAGATCATGTACGTTCGACGATGGGATG
TGTTCACTGCAGACGGATTAGATCCGCCCAGTTCTCTGCCGCTGAACGAA
AAGATGACTCGGTTTGAAAATCACTACGGGGAGCAGTTGTTGGGAATGTT
CAACCGGTTCCCAGCTAACGACGACAACACGTTCTCAGAAGTGTTTCAGG
AGGAAGACTCGCTGGTGAACGTGATGGACTCCATGACAAATATCCAAAAC
TCGTTCACGAACTTGGTGAACCTTCCATTCCGGCAGGTGGAACAGCGCAA
CTTAGCGCTGCGCATGGGGGAGCAAGATTACCTACTGGGCGAGAAGTACA
TCAACCAGACGCTGTACACAGTACGCCAAGGCCAATCTCTATCGCGCGCG
GGCGGTATAGGAAACGTCCGTTTCTCCAGGTTGCGCGACAAGCTGTCGAG
CGTGCAGCGACGCATCGCGCTAAGCTACAGCTCGCGCTTCTCGGCGGTGA
CAAACGGCAAGGCGGCGCTGCTGGCGGACGCGGAGACGACGGTGTTCGAG
TTCGCAAACCCGCAGCTGAACGGAGCGGGCTGGGCAACAACGGACGGCCT
GGGTACGGACGACAGCTTATCGTAG

protein sequence of Gcaud3424.t1

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=625bp
MRIADPAIMFSPFRFVFATVLALSATVSSAMYTPDVPWRDAATFEYDLRI
SDEFNGNRLDLSKWDPHGKRNPDTNCPNWNGPPSTSQPQWSTFFATTTEP
GGGSAEKFYEVRGGKLILRTDSKPLEYFKQREYYCDANTFKCNHNDQIEC
HATDYNGNAFYKDAEKTQFAGVTHDKCKIEPYCIPHPEFVTGKPRVYSRL
VGAHITSKRSFKYGFFEVEVQLGDSPAVAAVWMHDDQMVDGFCRFVKNTD
PNSDRDRQLECPSAIRSRRWQEIDMLEAMNSVIHQERYVPNIHVFSGYKG
EFTSETAVDNGDGNMGGGPIVVKQSLFNEKNPNFEDLTAQQRLANDWHFS
SGSVHSLDAPWKSGRRRIGLYWSPKEIRFYVDGVEVLRARNTLVHQSMLF
DFSYSYNVQWARETPSDEQVQQPFEIMYVRRWDVFTADGLDPPSSLPLNE
KMTRFENHYGEQLLGMFNRFPANDDNTFSEVFQEEDSLVNVMDSMTNIQN
SFTNLVNLPFRQVEQRNLALRMGEQDYLLGEKYINQTLYTVRQGQSLSRA
GGIGNVRFSRLRDKLSSVQRRIALSYSSRFSAVTNGKAALLADAETTVFE
FANPQLNGAGWATTDGLGTDDSLS*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:27570..29444-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:27570..29444- (Gracilaria caudata M_176_S67 male)
ATGCGCATCGCAGATCCTGCAATCATGTTCTCCCCATTTCGCTTTGTCTT
TGCCACCGTGCTGGCACTCTCAGCCACGGTCTCATCCGCAATGTACACAC
CAGATGTGCCGTGGCGTGACGCCGCCACATTCGAGTACGATCTCAGAATA
TCAGACGAGTTCAATGGCAATCGCCTGGACCTATCGAAATGGGATCCGCA
CGGAAAGCGAAACCCAGACACAAATTGCCCGAATTGGAACGGGCCTCCTT
CCACTTCTCAACCCCAATGGTCAACCTTTTTCGCCACAACCACTGAACCG
GGTGGTGGCTCCGCAGAGAAGTTCTACGAAGTACGAGGTGGTAAACTCAT
TCTTCGCACAGACAGCAAGCCTCTTGAGTACTTTAAGCAACGTGAGTATT
ACTGTGATGCAAATACGTTCAAATGCAATCACAACGACCAGATTGAATGT
CACGCAACCGATTACAACGGAAACGCGTTTTACAAAGACGCTGAAAAGAC
CCAGTTTGCTGGCGTAACGCACGACAAGTGCAAGATTGAGCCGTACTGCA
TTCCACATCCTGAGTTTGTAACGGGCAAGCCACGCGTGTACTCCCGTTTG
GTGGGCGCGCACATCACATCGAAACGAAGCTTCAAGTATGGCTTCTTCGA
GGTCGAAGTACAGCTTGGAGATTCTCCCGCTGTGGCAGCAGTATGGATGC
ACGACGACCAAATGGTGGACGGCTTCTGTCGTTTCGTGAAGAACACTGAT
CCTAATAGCGATCGGGATCGGCAGTTAGAATGCCCCAGCGCCATTCGGTC
TCGAAGATGGCAGGAGATTGATATGTTAGAAGCCATGAACAGTGTCATCC
ATCAAGAGCGTTACGTTCCAAACATTCATGTGTTCTCTGGGTACAAGGGA
GAATTCACGAGTGAGACGGCGGTGGATAATGGCGATGGAAACATGGGAGG
TGGGCCGATTGTGGTGAAACAATCGTTGTTCAACGAAAAGAATCCCAACT
TTGAAGATTTGACAGCGCAACAGCGACTGGCAAACGACTGGCACTTTAGC
TCGGGTTCGGTGCATTCGTTGGATGCGCCATGGAAATCAGGACGGCGACG
CATCGGACTGTATTGGTCACCGAAGGAGATTCGGTTCTACGTGGATGGGG
TGGAGGTACTTCGCGCTCGTAACACGCTGGTTCACCAATCGATGTTGTTC
GACTTTTCATACTCGTACAACGTACAATGGGCGCGAGAGACTCCAAGTGA
CGAACAGGTGCAGCAACCGTTCGAGATCATGTACGTTCGACGATGGGATG
TGTTCACTGCAGACGGATTAGATCCGCCCAGTTCTCTGCCGCTGAACGAA
AAGATGACTCGGTTTGAAAATCACTACGGGGAGCAGTTGTTGGGAATGTT
CAACCGGTTCCCAGCTAACGACGACAACACGTTCTCAGAAGTGTTTCAGG
AGGAAGACTCGCTGGTGAACGTGATGGACTCCATGACAAATATCCAAAAC
TCGTTCACGAACTTGGTGAACCTTCCATTCCGGCAGGTGGAACAGCGCAA
CTTAGCGCTGCGCATGGGGGAGCAAGATTACCTACTGGGCGAGAAGTACA
TCAACCAGACGCTGTACACAGTACGCCAAGGCCAATCTCTATCGCGCGCG
GGCGGTATAGGAAACGTCCGTTTCTCCAGGTTGCGCGACAAGCTGTCGAG
CGTGCAGCGACGCATCGCGCTAAGCTACAGCTCGCGCTTCTCGGCGGTGA
CAAACGGCAAGGCGGCGCTGCTGGCGGACGCGGAGACGACGGTGTTCGAG
TTCGCAAACCCGCAGCTGAACGGAGCGGGCTGGGCAACAACGGACGGCCT
GGGTACGGACGACAGCTTATCGTAG

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:27570..29444-

>Gcaud3424.t1 ID=Gcaud3424.t1|Name=Gcaud3424.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1875bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:27570..29444- (Gracilaria caudata M_176_S67 male)
ATGCGCATCGCAGATCCTGCAATCATGTTCTCCCCATTTCGCTTTGTCTT
TGCCACCGTGCTGGCACTCTCAGCCACGGTCTCATCCGCAATGTACACAC
CAGATGTGCCGTGGCGTGACGCCGCCACATTCGAGTACGATCTCAGAATA
TCAGACGAGTTCAATGGCAATCGCCTGGACCTATCGAAATGGGATCCGCA
CGGAAAGCGAAACCCAGACACAAATTGCCCGAATTGGAACGGGCCTCCTT
CCACTTCTCAACCCCAATGGTCAACCTTTTTCGCCACAACCACTGAACCG
GGTGGTGGCTCCGCAGAGAAGTTCTACGAAGTACGAGGTGGTAAACTCAT
TCTTCGCACAGACAGCAAGCCTCTTGAGTACTTTAAGCAACGTGAGTATT
ACTGTGATGCAAATACGTTCAAATGCAATCACAACGACCAGATTGAATGT
CACGCAACCGATTACAACGGAAACGCGTTTTACAAAGACGCTGAAAAGAC
CCAGTTTGCTGGCGTAACGCACGACAAGTGCAAGATTGAGCCGTACTGCA
TTCCACATCCTGAGTTTGTAACGGGCAAGCCACGCGTGTACTCCCGTTTG
GTGGGCGCGCACATCACATCGAAACGAAGCTTCAAGTATGGCTTCTTCGA
GGTCGAAGTACAGCTTGGAGATTCTCCCGCTGTGGCAGCAGTATGGATGC
ACGACGACCAAATGGTGGACGGCTTCTGTCGTTTCGTGAAGAACACTGAT
CCTAATAGCGATCGGGATCGGCAGTTAGAATGCCCCAGCGCCATTCGGTC
TCGAAGATGGCAGGAGATTGATATGTTAGAAGCCATGAACAGTGTCATCC
ATCAAGAGCGTTACGTTCCAAACATTCATGTGTTCTCTGGGTACAAGGGA
GAATTCACGAGTGAGACGGCGGTGGATAATGGCGATGGAAACATGGGAGG
TGGGCCGATTGTGGTGAAACAATCGTTGTTCAACGAAAAGAATCCCAACT
TTGAAGATTTGACAGCGCAACAGCGACTGGCAAACGACTGGCACTTTAGC
TCGGGTTCGGTGCATTCGTTGGATGCGCCATGGAAATCAGGACGGCGACG
CATCGGACTGTATTGGTCACCGAAGGAGATTCGGTTCTACGTGGATGGGG
TGGAGGTACTTCGCGCTCGTAACACGCTGGTTCACCAATCGATGTTGTTC
GACTTTTCATACTCGTACAACGTACAATGGGCGCGAGAGACTCCAAGTGA
CGAACAGGTGCAGCAACCGTTCGAGATCATGTACGTTCGACGATGGGATG
TGTTCACTGCAGACGGATTAGATCCGCCCAGTTCTCTGCCGCTGAACGAA
AAGATGACTCGGTTTGAAAATCACTACGGGGAGCAGTTGTTGGGAATGTT
CAACCGGTTCCCAGCTAACGACGACAACACGTTCTCAGAAGTGTTTCAGG
AGGAAGACTCGCTGGTGAACGTGATGGACTCCATGACAAATATCCAAAAC
TCGTTCACGAACTTGGTGAACCTTCCATTCCGGCAGGTGGAACAGCGCAA
CTTAGCGCTGCGCATGGGGGAGCAAGATTACCTACTGGGCGAGAAGTACA
TCAACCAGACGCTGTACACAGTACGCCAAGGCCAATCTCTATCGCGCGCG
GGCGGTATAGGAAACGTCCGTTTCTCCAGGTTGCGCGACAAGCTGTCGAG
CGTGCAGCGACGCATCGCGCTAAGCTACAGCTCGCGCTTCTCGGCGGTGA
CAAACGGCAAGGCGGCGCTGCTGGCGGACGCGGAGACGACGGTGTTCGAG
TTCGCAAACCCGCAGCTGAACGGAGCGGGCTGGGCAACAACGGACGGCCT
GGGTACGGACGACAGCTTATCGTAG