Gcaud3043.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3043.t1
Unique NameGcaud3043.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length135
Homology
BLAST of Gcaud3043.t1 vs. uniprot
Match: A0A2V3IPJ1_9FLOR (Transcription elongation factor 1 homolog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPJ1_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 4.220e-49
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAANR--AAGVQAE 89
            MGKRKRATKPPPKKKMPKLEKVFNCPFCGHE SVEC + +SEN+GKLECRLCGVRYSTTVGRLEE IDVYYKWIDACDAAN+  AA  Q E
Sbjct:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHENSVECEVLRSENLGKLECRLCGVRYSTTVGRLEEAIDVYYKWIDACDAANQGGAADEQVE 91          
BLAST of Gcaud3043.t1 vs. uniprot
Match: UPI001CC465E2 (transcription elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2)

HSP 1 Score: 108 bits (271), Expect = 2.220e-28
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAG 85
            MGKRK + KP PKKKM KLE VFNCPFC HE+SV CTI + E IG+L C +C  +YST +  L E ID+Y +WID C+  N   G
Sbjct:    1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMDG 85          
BLAST of Gcaud3043.t1 vs. uniprot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog n=36 Tax=Mesangiospermae TaxID=1437183 RepID=ELOF1_ORYSJ)

HSP 1 Score: 102 bits (253), Expect = 8.720e-26
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK A KPPPKK+M KL+ VF+CPFC H  SVEC I     IG+  CR+C   +STTV  L E ID+Y +WID C+  N
Sbjct:    1 MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVN 81          
BLAST of Gcaud3043.t1 vs. uniprot
Match: A0A443PI70_9MAGN (Transcription elongation factor 1 homolog n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PI70_9MAGN)

HSP 1 Score: 100 bits (250), Expect = 2.350e-25
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK  TKPPPKK++ KL+ VFNCPFC HE++V+C   +   I +L C +C   Y+T++  L E +DVY +WID C+ AN
Sbjct:    1 MGKRKSRTKPPPKKRLDKLDMVFNCPFCNHEKTVDCLFDRGNKIAELSCGVCKESYNTSINNLTEAVDVYSEWIDECERAN 81          
BLAST of Gcaud3043.t1 vs. uniprot
Match: UPI001C4F831C (transcription elongation factor 1 homolog n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F831C)

HSP 1 Score: 101 bits (251), Expect = 2.390e-25
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAG 85
            MGKRK   K  PKK+M KLE VFNCPFC HE+SV C I + E IG++ C +C  RYST +  L E ID+Y +WID C+  N   G
Sbjct:    1 MGKRKSRPKTEPKKRMEKLESVFNCPFCNHEKSVNCNIDRKEMIGEVMCIICQERYSTAITNLSEPIDIYSEWIDECERVNEMDG 85          
BLAST of Gcaud3043.t1 vs. uniprot
Match: UPI0009016FB3 (transcription elongation factor 1 homolog n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009016FB3)

HSP 1 Score: 100 bits (249), Expect = 3.330e-25
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK   KPPPKK+M KL+ VF+CPFC H  SVEC I     IG+ EC +C   YSTTV  L E ID+Y +WID C+  N
Sbjct:    1 MGKRKSKAKPPPKKRMDKLDTVFSCPFCSHGTSVECRIDMKNAIGEAECNICKESYSTTVTALTEPIDIYSEWIDECERVN 81          
BLAST of Gcaud3043.t1 vs. uniprot
Match: A0A6A4LB41_9ERIC (Transcription elongation factor 1 homolog (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LB41_9ERIC)

HSP 1 Score: 100 bits (249), Expect = 3.520e-25
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAGVQAE 89
            MGKRK   KPPPKK+M KL+ VF+CPFC H  SVEC I    +IG+  CR+C   +STTV  L E ID+Y +WID C+  N      AE
Sbjct:    1 MGKRKSKAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNSIGEAICRICQENFSTTVTALTEPIDIYSEWIDECELVNNVEDDGAE 89          
BLAST of Gcaud3043.t1 vs. uniprot
Match: A0A834X272_9FABA (Transcription elongation factor 1 homolog n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X272_9FABA)

HSP 1 Score: 100 bits (248), Expect = 4.860e-25
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK   KPPPKK+M KL+ VF+CPFC H  SVEC +    +IG+L CR+C   +STT+  L E IDVY +WID C+  N
Sbjct:    1 MGKRKSRRKPPPKKRMNKLDTVFSCPFCNHGSSVECRLDTRNSIGELACRICQENFSTTITALSEPIDVYSEWIDECERFN 81          
BLAST of Gcaud3043.t1 vs. uniprot
Match: M2Y2D5_GALSU (Transcription elongation factor 1 homolog n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y2D5_GALSU)

HSP 1 Score: 99.8 bits (247), Expect = 5.820e-25
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK   KP  K K P L+KVFNCPFCGHE++V+CTISKS+ IG + CR+C   Y+  V  L+E +DVY +WID    AN
Sbjct:    1 MGKRKSRKKPIQKPKKPTLDKVFNCPFCGHEKTVDCTISKSKGIGSVSCRVCQASYTAEVTHLDEAVDVYAEWIDKTVQAN 81          
BLAST of Gcaud3043.t1 vs. uniprot
Match: M5WI77_PRUPE (Transcription elongation factor 1 homolog n=3 Tax=Prunus TaxID=3754 RepID=M5WI77_PRUPE)

HSP 1 Score: 99.8 bits (247), Expect = 7.290e-25
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    1 MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECRLCGVRYSTTVGRLEEEIDVYYKWIDACDAAN 81
            MGKRK + KPPPKK+M KL+ VF+CPFC H  SVEC I     IG+  CR+C   +STT+  L E IDVY +WID C+  N
Sbjct:    1 MGKRKSSAKPPPKKRMDKLDTVFSCPFCSHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEPIDVYSEWIDECERVN 81          
The following BLAST results are available for this feature:
BLAST of Gcaud3043.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPJ1_9FLOR4.220e-4985.71Transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI001CC465E22.220e-2857.65transcription elongation factor 1 homolog n=2 Tax=... [more]
ELOF1_ORYSJ8.720e-2656.79Transcription elongation factor 1 homolog n=36 Tax... [more]
A0A443PI70_9MAGN2.350e-2551.85Transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI001C4F831C2.390e-2554.12transcription elongation factor 1 homolog n=1 Tax=... [more]
UPI0009016FB33.330e-2556.79transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A6A4LB41_9ERIC3.520e-2552.81Transcription elongation factor 1 homolog (Fragmen... [more]
A0A834X272_9FABA4.860e-2555.56Transcription elongation factor 1 homolog n=1 Tax=... [more]
M2Y2D5_GALSU5.820e-2556.79Transcription elongation factor 1 homolog n=1 Tax=... [more]
M5WI77_PRUPE7.290e-2555.56Transcription elongation factor 1 homolog n=3 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
e-value: 2.4E-30
score: 104.4
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 1..124
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 16..82
e-value: 1.6E-27
score: 97.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..134
NoneNo IPR availablePANTHERPTHR20934:SF0TRANSCRIPTION ELONGATION FACTOR 1 HOMOLOGcoord: 1..124
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_870_length_16779_cov_4.279183contigNODE_870_length_16779_cov_4.279183:1686..2090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3043.t1Gcaud3043.t1Gracilaria caudata M_176_S67 malemRNANODE_870_length_16779_cov_4.279183 1686..2090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=135bp
MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECR
LCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAGVQAEEEEVVVAGKAV
RTADEEEEDGDTVRGGNEGGKVVVDEDDFDDEGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
IPR038567T_Elf1_sf