Gcaud3043.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3043.t1
Unique Name	Gcaud3043.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	135

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_870_length_16779_cov_4.279183	contig	NODE_870_length_16779_cov_4.279183:1686..2090 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb10g003710.1
PFAMs	Elf1
Max annot lvl	35493\|Streptophyta
GOs	GO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045815,GO:0045893,GO:0045935,GO:0046483,GO:0048096,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	7.53e-27
EggNOG OGs	COG4888@1\|root,KOG3214@2759\|Eukaryota,37VDV@33090\|Viridiplantae,3GJGX@35493\|Streptophyta,3M0DN@4447\|Liliopsida,3IIM1@38820\|Poales
Description	Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3043	Gcaud3043	Gracilaria caudata M_176_S67 male	gene	NODE_870_length_16779_cov_4.279183 1686..2090 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3043.t1.stop1	Gcaud3043.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_870_length_16779_cov_4.279183 1686..1688 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3043.t1.CDS1	Gcaud3043.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_870_length_16779_cov_4.279183 1686..2090 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3043.t1.exon1	Gcaud3043.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_870_length_16779_cov_4.279183 1686..2090 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3043.t1.start1	Gcaud3043.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_870_length_16779_cov_4.279183 2088..2090 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3043.t1	Gcaud3043.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_870_length_16779_cov_4.279183 1686..2090 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_870_length_16779_cov_4.279183:1686..2090-
coding sequence from alignment at NODE_870_length_16779_cov_4.279183:1686..2090-

mRNA sequence

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=135bp
MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECR
LCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAGVQAEEEEVVVAGKAV
RTADEEEEDGDTVRGGNEGGKVVVDEDDFDDEGV*

spliced messenger RNA

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:1686..2090- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAACGTAAACGAGCAACCAAACCACCGCCAAAGAAGAAGATGCC
CAAGCTGGAAAAGGTGTTCAATTGCCCGTTTTGTGGGCACGAAGAAAGCG
TGGAATGCACCATCTCTAAAAGCGAGAACATAGGCAAGCTCGAATGCCGG
CTTTGTGGCGTGAGGTATTCCACCACTGTCGGTAGACTGGAGGAAGAAAT
CGACGTTTACTACAAATGGATCGACGCGTGCGACGCAGCGAACCGCGCGG
CGGGGGTGCAGGCGGAAGAGGAGGAGGTGGTCGTGGCAGGGAAAGCTGTT
CGCACGGCGGACGAGGAGGAGGAGGATGGCGATACTGTCAGAGGCGGGAA
CGAGGGAGGGAAGGTTGTTGTGGATGAGGATGACTTTGATGATGAGGGTG
TGTGA

protein sequence of Gcaud3043.t1

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=135bp
MGKRKRATKPPPKKKMPKLEKVFNCPFCGHEESVECTISKSENIGKLECR
LCGVRYSTTVGRLEEEIDVYYKWIDACDAANRAAGVQAEEEEVVVAGKAV
RTADEEEEDGDTVRGGNEGGKVVVDEDDFDDEGV*

mRNA from alignment at NODE_870_length_16779_cov_4.279183:1686..2090-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:1686..2090- (Gracilaria caudata M_176_S67 male)
ATGGGGAAACGTAAACGAGCAACCAAACCACCGCCAAAGAAGAAGATGCC
CAAGCTGGAAAAGGTGTTCAATTGCCCGTTTTGTGGGCACGAAGAAAGCG
TGGAATGCACCATCTCTAAAAGCGAGAACATAGGCAAGCTCGAATGCCGG
CTTTGTGGCGTGAGGTATTCCACCACTGTCGGTAGACTGGAGGAAGAAAT
CGACGTTTACTACAAATGGATCGACGCGTGCGACGCAGCGAACCGCGCGG
CGGGGGTGCAGGCGGAAGAGGAGGAGGTGGTCGTGGCAGGGAAAGCTGTT
CGCACGGCGGACGAGGAGGAGGAGGATGGCGATACTGTCAGAGGCGGGAA
CGAGGGAGGGAAGGTTGTTGTGGATGAGGATGACTTTGATGATGAGGGTG
TGTGA

Coding sequence (CDS) from alignment at NODE_870_length_16779_cov_4.279183:1686..2090-

>Gcaud3043.t1 ID=Gcaud3043.t1|Name=Gcaud3043.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=405bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:1686..2090- (Gracilaria caudata M_176_S67 male)
ATGGGGAAACGTAAACGAGCAACCAAACCACCGCCAAAGAAGAAGATGCC
CAAGCTGGAAAAGGTGTTCAATTGCCCGTTTTGTGGGCACGAAGAAAGCG
TGGAATGCACCATCTCTAAAAGCGAGAACATAGGCAAGCTCGAATGCCGG
CTTTGTGGCGTGAGGTATTCCACCACTGTCGGTAGACTGGAGGAAGAAAT
CGACGTTTACTACAAATGGATCGACGCGTGCGACGCAGCGAACCGCGCGG
CGGGGGTGCAGGCGGAAGAGGAGGAGGTGGTCGTGGCAGGGAAAGCTGTT
CGCACGGCGGACGAGGAGGAGGAGGATGGCGATACTGTCAGAGGCGGGAA
CGAGGGAGGGAAGGTTGTTGTGGATGAGGATGACTTTGATGATGAGGGTG
TGTGA