Gcaud2627.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2627.t1
Unique NameGcaud2627.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length71
Homology
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BLAST of Gcaud2627.t1 vs. uniprot
Match: A0A2V3ISE3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISE3_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 8.810e-29
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    3 SAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDEQNAAAEAARLNALKRSGF 68
            SA ATIR LWAKDPVVCF+CV+GAVGV +P+ VPK+WG+YPDQIARDEQ AAAEA RL+AL+R+G 
Sbjct:    2 SALATIRTLWAKDPVVCFSCVIGAVGVAMPLFVPKLWGKYPDQIARDEQQAAAEAVRLDALRRAGL 67
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BLAST of Gcaud2627.t1 vs. uniprot
Match: R7QLC5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC5_CHOCR)

HSP 1 Score: 83.6 bits (205), Expect = 9.030e-20
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0 
Query:    1 MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDEQNAAAEAARLNALKRSGF 68
            MS  +  +R  WA +PVVCF+ V+GAVG+ LP  VPK+WGRYPD+I  DE++A  EAARL AL+RSG 
Sbjct:    1 MSGISIFLRKAWANEPVVCFSIVIGAVGLSLPCFVPKLWGRYPDKIQTDERSAMTEAARLQALERSGL 68
The following BLAST results are available for this feature:
BLAST of Gcaud2627.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISE3_9FLOR8.810e-2975.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLC5_CHOCR9.030e-2058.82Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 17..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..16
NoneNo IPR availableTMHMMTMhelixcoord: 17..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:18500..18946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1Gcaud2627.t1Gracilaria caudata M_176_S67 malemRNANODE_205_length_37462_cov_4.544219 18500..18946 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=71bp
MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDE
QNAAAEAARLNALKRSGFGK*
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