Gcaud2627.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2627.t1
Unique Name	Gcaud2627.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	71

Homology

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BLAST of Gcaud2627.t1 vs. uniprot
Match: A0A2V3ISE3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISE3_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 8.810e-29
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0

Query:    3 SAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDEQNAAAEAARLNALKRSGF 68
            SA ATIR LWAKDPVVCF+CV+GAVGV +P+ VPK+WG+YPDQIARDEQ AAAEA RL+AL+R+G 
Sbjct:    2 SALATIRTLWAKDPVVCFSCVIGAVGVAMPLFVPKLWGKYPDQIARDEQQAAAEAVRLDALRRAGL 67

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BLAST of Gcaud2627.t1 vs. uniprot
Match: R7QLC5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC5_CHOCR)

HSP 1 Score: 83.6 bits (205), Expect = 9.030e-20
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0

Query:    1 MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDEQNAAAEAARLNALKRSGF 68
            MS  +  +R  WA +PVVCF+ V+GAVG+ LP  VPK+WGRYPD+I  DE++A  EAARL AL+RSG 
Sbjct:    1 MSGISIFLRKAWANEPVVCFSIVIGAVGLSLPCFVPKLWGRYPDKIQTDERSAMTEAARLQALERSGL 68

The following BLAST results are available for this feature:

BLAST of Gcaud2627.t1 vs. uniprot

BLAST of Gcaud2627.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3ISE3_9FLOR	8.810e-29	75.76	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QLC5_CHOCR	9.030e-20	58.82	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 17..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..16
None	No IPR available	TMHMM	TMhelix		coord: 17..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_205_length_37462_cov_4.544219	contig	NODE_205_length_37462_cov_4.544219:18500..18946 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2627.t1	Gcaud2627.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_205_length_37462_cov_4.544219 18500..18946 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=71bp
MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDE
QNAAAEAARLNALKRSGFGK*