Gcaud2613.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2613.t1
Unique Name	Gcaud2613.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	280

Homology

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BLAST of Gcaud2613.t1 vs. uniprot
Match: A0A2V3IT58_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT58_9FLOR)

HSP 1 Score: 165 bits (418), Expect = 2.040e-46
Identity = 99/273 (36.26%), Postives = 155/273 (56.78%), Query Frame = 0

Query:    9 AFYFAVFVVLNVLRIISSAVS--AAHRRVQVLYASHNRIKTWLRDTEVQTPNHVALSGAIASEMQAVWESALALISRGTRHITLHDPNHKIDALQLEQLVQASHKSLLCTVRQIASKCTLQSVCRSASNSSVHQVEGVAGSIAIRTCNEERGVEHDEVVVTIVEGRSGQSLLTRAARTLANSADIETSLLSAETVTEWLDADTANCMLPSEPDVVLVFPKSCSSCVPTLDGFPVWQLRLSQIVFATQPINNLKLQHLLQLVTKASSAPKRFGR 279
            A + A++  L ++ I+  AV+  +A  R  V      + +       + TP H+A SGA+A  +  + +    L+  GT+H TLHD + +ID  +L+ L+Q++      T+ ++++K T        +   VH       + A +T   +   +H   ++T+V    G SLLTRA + L +S   +T+ L+A+TVTEWLD D  NCMLPSEPD++ +FP S S+ +P L+ FPVWQLRL+Q++F   P++ L  Q LL+    AS APKRFGR
Sbjct:    8 ALHVAIYAALRLVFILHDAVTNASAFLRAHVADRLQKQARNNRAALNLDTPRHIAFSGALAEHLPLLVDHIHTLLRSGTQHFTLHDASFRIDPDRLQHLLQSNRNRQQYTLTELSAKRT--------TTKQVH-------THAPKT---QPNAQHT-TIITVVHPACGPSLLTRATKHLISSPAFQTASLNAQTVTEWLDKDPQNCMLPSEPDLLFIFPSSASTFLPVLNRFPVWQLRLTQLIFLPYPVSKLTTQQLLKTAINASKAPKRFGR 261

The following BLAST results are available for this feature:

BLAST of Gcaud2613.t1 vs. uniprot

BLAST of Gcaud2613.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IT58_9FLOR	2.040e-46	36.26	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036424	Decaprenyl diphosphate synthase-like superfamily	GENE3D	3.40.1180.10		coord: 139..279 e-value: 2.8E-8 score: 35.3
IPR036424	Decaprenyl diphosphate synthase-like superfamily	SUPERFAMILY	64005	Undecaprenyl diphosphate synthase	coord: 66..267
None	No IPR available	PANTHER	PTHR21528:SF0	DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT NUS1	coord: 3..279
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..279
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..30
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR038887	Dehydrodolichyl diphosphate synthase complex subunit Nus1	PANTHER	PTHR21528	UNCHARACTERIZED	coord: 3..279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_972_length_15628_cov_3.908026	contig	NODE_972_length_15628_cov_3.908026:10428..11267 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2613.t1	Gcaud2613.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_972_length_15628_cov_3.908026 10428..11267 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
MLRSALLRAFYFAVFVVLNVLRIISSAVSAAHRRVQVLYASHNRIKTWLR
DTEVQTPNHVALSGAIASEMQAVWESALALISRGTRHITLHDPNHKIDAL
QLEQLVQASHKSLLCTVRQIASKCTLQSVCRSASNSSVHQVEGVAGSIAI
RTCNEERGVEHDEVVVTIVEGRSGQSLLTRAARTLANSADIETSLLSAET
VTEWLDADTANCMLPSEPDVVLVFPKSCSSCVPTLDGFPVWQLRLSQIVF
ATQPINNLKLQHLLQLVTKASSAPKRFGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036424	UPP_synth-like_sf
IPR038887	Nus1/NgBR