Gcaud2613.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2613.t1
Unique NameGcaud2613.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_972_length_15628_cov_3.908026contigNODE_972_length_15628_cov_3.908026:10428..11267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1047171.Mycgr3P33116
PFAMsPrenyltransf
Max annot lvl4751|Fungi
KEGG rclassRC00279,RC02839
KEGG koko:K19177
KEGG ReactionR05556
KEGG Pathwayko00900,ko01110,map00900,map01110
GOsGO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005811,GO:0006066,GO:0006464,GO:0006486,GO:0006629,GO:0006720,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0019348,GO:0019408,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1904423,GO:1990234
Evalue0.000104
EggNOG OGsCOG0020@1|root,KOG2818@2759|Eukaryota,39XNK@33154|Opisthokonta,3NXS5@4751|Fungi,3QQ6F@4890|Ascomycota,200RT@147541|Dothideomycetes,3MI8B@451867|Dothideomycetidae
EC2.5.1.87
Descriptionto Saccharomyces cerevisiae NUS1 (YDL193W)
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2613Gcaud2613Gracilaria caudata M_176_S67 malegeneNODE_972_length_15628_cov_3.908026 10428..11267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2613.t1.stop1Gcaud2613.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_972_length_15628_cov_3.908026 10428..10430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2613.t1.CDS1Gcaud2613.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_972_length_15628_cov_3.908026 10428..11267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2613.t1.exon1Gcaud2613.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_972_length_15628_cov_3.908026 10428..11267 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2613.t1.start1Gcaud2613.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_972_length_15628_cov_3.908026 11265..11267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2613.t1Gcaud2613.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_972_length_15628_cov_3.908026 10428..11267 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=280bp
MLRSALLRAFYFAVFVVLNVLRIISSAVSAAHRRVQVLYASHNRIKTWLR
DTEVQTPNHVALSGAIASEMQAVWESALALISRGTRHITLHDPNHKIDAL
QLEQLVQASHKSLLCTVRQIASKCTLQSVCRSASNSSVHQVEGVAGSIAI
RTCNEERGVEHDEVVVTIVEGRSGQSLLTRAARTLANSADIETSLLSAET
VTEWLDADTANCMLPSEPDVVLVFPKSCSSCVPTLDGFPVWQLRLSQIVF
ATQPINNLKLQHLLQLVTKASSAPKRFGR*
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spliced messenger RNA

>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:10428..11267- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGATCCGCATTGCTCCGCGCGTTCTACTTTGCCGTTTTCGTCGT
GCTCAACGTCTTGCGCATCATCTCGAGCGCCGTGTCGGCTGCACATCGAC
GCGTTCAAGTTTTGTATGCATCTCACAATCGAATCAAGACGTGGCTGCGC
GACACTGAGGTGCAAACCCCGAATCATGTCGCCTTATCCGGCGCCATCGC
CAGCGAAATGCAAGCTGTATGGGAGAGTGCGCTGGCTCTCATCTCGCGGG
GAACGCGACACATTACGCTTCATGATCCGAACCATAAGATCGATGCGCTC
CAGCTTGAGCAATTGGTGCAAGCGAGTCACAAAAGCCTGCTTTGCACCGT
CCGACAGATCGCTTCAAAATGTACGCTGCAATCAGTTTGTCGAAGCGCTT
CCAATTCAAGTGTGCACCAAGTGGAAGGCGTGGCTGGATCGATAGCAATA
CGAACGTGCAACGAGGAAAGAGGGGTGGAGCACGACGAGGTGGTCGTCAC
AATTGTAGAGGGGCGAAGTGGACAGTCTCTCTTGACTCGTGCAGCTCGAA
CACTCGCCAACTCAGCAGACATTGAGACGTCTCTGCTCAGCGCGGAGACC
GTCACCGAATGGCTGGATGCCGACACCGCCAATTGCATGCTACCGTCGGA
ACCCGATGTCGTTTTAGTGTTTCCAAAGTCGTGTTCGTCGTGCGTGCCGA
CACTTGACGGCTTTCCTGTGTGGCAGCTTCGCCTGTCTCAAATCGTGTTC
GCAACACAACCGATCAACAATTTGAAGCTGCAACACCTGTTACAACTTGT
TACAAAAGCCTCCAGCGCTCCGAAACGCTTCGGTCGATAG
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protein sequence of Gcaud2613.t1

>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
MLRSALLRAFYFAVFVVLNVLRIISSAVSAAHRRVQVLYASHNRIKTWLR
DTEVQTPNHVALSGAIASEMQAVWESALALISRGTRHITLHDPNHKIDAL
QLEQLVQASHKSLLCTVRQIASKCTLQSVCRSASNSSVHQVEGVAGSIAI
RTCNEERGVEHDEVVVTIVEGRSGQSLLTRAARTLANSADIETSLLSAET
VTEWLDADTANCMLPSEPDVVLVFPKSCSSCVPTLDGFPVWQLRLSQIVF
ATQPINNLKLQHLLQLVTKASSAPKRFGR*
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mRNA from alignment at NODE_972_length_15628_cov_3.908026:10428..11267-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:10428..11267- (Gracilaria caudata M_176_S67 male)
ATGCTACGATCCGCATTGCTCCGCGCGTTCTACTTTGCCGTTTTCGTCGT
GCTCAACGTCTTGCGCATCATCTCGAGCGCCGTGTCGGCTGCACATCGAC
GCGTTCAAGTTTTGTATGCATCTCACAATCGAATCAAGACGTGGCTGCGC
GACACTGAGGTGCAAACCCCGAATCATGTCGCCTTATCCGGCGCCATCGC
CAGCGAAATGCAAGCTGTATGGGAGAGTGCGCTGGCTCTCATCTCGCGGG
GAACGCGACACATTACGCTTCATGATCCGAACCATAAGATCGATGCGCTC
CAGCTTGAGCAATTGGTGCAAGCGAGTCACAAAAGCCTGCTTTGCACCGT
CCGACAGATCGCTTCAAAATGTACGCTGCAATCAGTTTGTCGAAGCGCTT
CCAATTCAAGTGTGCACCAAGTGGAAGGCGTGGCTGGATCGATAGCAATA
CGAACGTGCAACGAGGAAAGAGGGGTGGAGCACGACGAGGTGGTCGTCAC
AATTGTAGAGGGGCGAAGTGGACAGTCTCTCTTGACTCGTGCAGCTCGAA
CACTCGCCAACTCAGCAGACATTGAGACGTCTCTGCTCAGCGCGGAGACC
GTCACCGAATGGCTGGATGCCGACACCGCCAATTGCATGCTACCGTCGGA
ACCCGATGTCGTTTTAGTGTTTCCAAAGTCGTGTTCGTCGTGCGTGCCGA
CACTTGACGGCTTTCCTGTGTGGCAGCTTCGCCTGTCTCAAATCGTGTTC
GCAACACAACCGATCAACAATTTGAAGCTGCAACACCTGTTACAACTTGT
TACAAAAGCCTCCAGCGCTCCGAAACGCTTCGGTCGATAG
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Coding sequence (CDS) from alignment at NODE_972_length_15628_cov_3.908026:10428..11267-

>Gcaud2613.t1 ID=Gcaud2613.t1|Name=Gcaud2613.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=840bp|location=Sequence derived from alignment at NODE_972_length_15628_cov_3.908026:10428..11267- (Gracilaria caudata M_176_S67 male)
ATGCTACGATCCGCATTGCTCCGCGCGTTCTACTTTGCCGTTTTCGTCGT
GCTCAACGTCTTGCGCATCATCTCGAGCGCCGTGTCGGCTGCACATCGAC
GCGTTCAAGTTTTGTATGCATCTCACAATCGAATCAAGACGTGGCTGCGC
GACACTGAGGTGCAAACCCCGAATCATGTCGCCTTATCCGGCGCCATCGC
CAGCGAAATGCAAGCTGTATGGGAGAGTGCGCTGGCTCTCATCTCGCGGG
GAACGCGACACATTACGCTTCATGATCCGAACCATAAGATCGATGCGCTC
CAGCTTGAGCAATTGGTGCAAGCGAGTCACAAAAGCCTGCTTTGCACCGT
CCGACAGATCGCTTCAAAATGTACGCTGCAATCAGTTTGTCGAAGCGCTT
CCAATTCAAGTGTGCACCAAGTGGAAGGCGTGGCTGGATCGATAGCAATA
CGAACGTGCAACGAGGAAAGAGGGGTGGAGCACGACGAGGTGGTCGTCAC
AATTGTAGAGGGGCGAAGTGGACAGTCTCTCTTGACTCGTGCAGCTCGAA
CACTCGCCAACTCAGCAGACATTGAGACGTCTCTGCTCAGCGCGGAGACC
GTCACCGAATGGCTGGATGCCGACACCGCCAATTGCATGCTACCGTCGGA
ACCCGATGTCGTTTTAGTGTTTCCAAAGTCGTGTTCGTCGTGCGTGCCGA
CACTTGACGGCTTTCCTGTGTGGCAGCTTCGCCTGTCTCAAATCGTGTTC
GCAACACAACCGATCAACAATTTGAAGCTGCAACACCTGTTACAACTTGT
TACAAAAGCCTCCAGCGCTCCGAAACGCTTCGGTCGATAG
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