Gcaud2607.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2607.t1
Unique NameGcaud2607.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length326
Homology
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A2V3IWH4_9FLOR (WD repeat-containing protein 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWH4_9FLOR)

HSP 1 Score: 135 bits (341), Expect = 1.050e-33
Identity = 294/318 (92.45%), Postives = 304/318 (95.60%), Query Frame = 0
Query:    1 MRPQVQT-DGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGRERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLNHRYCIFSTFVVTHEVKHIAXXXXXXXXXXXXXXXXXXXXXXXXXTDVVLAVAAHPTHSILASGALEKDKTVKLWAAQCD 317
            MRP  Q+ D  H +P+Y L +TL GH KAISSVKFSPNGQ+LASSSADKTIRIWDALTG++RV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLNHRYCIFSTFVVT+ VKHI XXXXXXXXXXXXXXXXXXXXXXXXXTDVVLAVAAHPT+SILASGALEKDKTVKLWAA+ D
Sbjct:    1 MRPDTQSPDDVHYMPHYGLFHTLIGHNKAISSVKFSPNGQYLASSSADKTIRIWDALTGQKRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLNHRYCIFSTFVVTNPVKHIXXXXXXXXXXXXXXXXXXXXXXXXXXTDVVLAVAAHPTNSILASGALEKDKTVKLWAAKDD 318          
BLAST of Gcaud2607.t1 vs. uniprot
Match: R7QCP6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCP6_CHOCR)

HSP 1 Score: 100 bits (250), Expect = 1.040e-20
Identity = 274/302 (90.73%), Postives = 283/302 (93.71%), Query Frame = 0
Query:   16 YSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGRERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLNHRYCIFSTFVVTHEVKHIAXXXXXXXXXXXXXXXXXXXXXXXXXTDVVLAVAAHPTHSILASGALEKDKTVKLWAAQCD 317
            Y L Y+L+GHKKAISSVKFSP+G+FLASSSADKTIRIWDAL G+E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HL+ RYCIFSTFVVT   KH  XXXXXXXXXXXXXXXXXXXXXXXXXTDVVLA+AAHP+ SILASGALE+DKTVKLW A  D
Sbjct:   20 YKLYYSLTGHKKAISSVKFSPDGRFLASSSADKTIRIWDALNGKEVSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTLVGEDNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGHLDSRYCIFSTFVVTGPQKHXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVVLALAAHPSLSILASGALERDKTVKLWRAPDD 321          
BLAST of Gcaud2607.t1 vs. uniprot
Match: UPI000181CC81 (WD repeat-containing protein 5 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI000181CC81)

HSP 1 Score: 77.4 bits (189), Expect = 1.790e-12
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    3 PQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            P+ Q+  T + PNY+L++TL+GH KA+SSVKFSPNG++LASSSADK I+IW A  G+
Sbjct:    6 PEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62          
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A4P9YY07_9FUNG (WD repeat-containing protein 5-like protein n=2 Tax=Zoopagales TaxID=78899 RepID=A0A4P9YY07_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 3.060e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    3 PQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            P    D     PNY L+Y+L GHKKA+SSVKFSP+G++LASSSADKT++IW A+ G+
Sbjct:   32 PAATADNAPKTPNYQLKYSLVGHKKAVSSVKFSPDGKWLASSSADKTVKIWHAINGK 88          
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A3P8IC90_9BILA (Uncharacterized protein n=2 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A3P8IC90_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 3.650e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0
Query:   13 LPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            LPNY+L+YTL+GH KA+SS+KFSPNG FLAS SADK I+IW A  G+
Sbjct:    7 LPNYTLRYTLAGHTKAVSSIKFSPNGHFLASCSADKLIKIWCAYDGK 53          
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A8D0CJU3_SCLFO (WD repeat-containing protein 5 n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A8D0CJU3_SCLFO)

HSP 1 Score: 76.3 bits (186), Expect = 4.370e-12
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    1 MRPQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            ++ Q  +  T + PNYSL++TL+GH KA+SSVKFSPNG++LASSSADK I+IW A  G+
Sbjct:   13 IKAQSASSSTPVKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 71          
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A0P7XGI4_SCLFO (WD repeat-containing protein 5 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7XGI4_SCLFO)

HSP 1 Score: 76.3 bits (186), Expect = 5.160e-12
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    6 QTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            Q+  T + PNYSL++TL+GH KA+SSVKFSPNG++LASSSADK I+IW A  G+
Sbjct:   25 QSKSTPVKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78          
BLAST of Gcaud2607.t1 vs. uniprot
Match: A0A8C9S0A1_SCLFO (WD repeat-containing protein 5 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9S0A1_SCLFO)

HSP 1 Score: 76.3 bits (186), Expect = 5.240e-12
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    6 QTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            Q+  T + PNYSL++TL+GH KA+SSVKFSPNG++LASSSADK I+IW A  G+
Sbjct:   25 QSKSTPVKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78          
BLAST of Gcaud2607.t1 vs. uniprot
Match: G5DZI1_9PIPI (Putative wd repeat domain 5 (Fragment) n=1 Tax=Pipa carvalhoi TaxID=191480 RepID=G5DZI1_9PIPI)

HSP 1 Score: 70.9 bits (172), Expect = 5.780e-12
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0
Query:   14 PNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            PNY+L++TL+GH KA+SSVKFSPNG +LASSSADK I+IW A  G+
Sbjct:   17 PNYALKFTLAGHTKAVSSVKFSPNGGWLASSSADKLIKIWGAYDGK 62          
BLAST of Gcaud2607.t1 vs. uniprot
Match: UPI001E1E243B (WD repeat-containing protein 5 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI001E1E243B)

HSP 1 Score: 75.9 bits (185), Expect = 5.880e-12
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    3 PQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTIRIWDALTGR 59
            P  Q+  T + PNY+L++TL+GH KA+SSVKFSPNG++LASSSADK I+IW A  G+
Sbjct:    2 PGYQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 58          
The following BLAST results are available for this feature:
BLAST of Gcaud2607.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWH4_9FLOR1.050e-3392.45WD repeat-containing protein 5 n=1 Tax=Gracilariop... [more]
R7QCP6_CHOCR1.040e-2090.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI000181CC811.790e-1261.40WD repeat-containing protein 5 n=1 Tax=Homo sapien... [more]
A0A4P9YY07_9FUNG3.060e-1259.65WD repeat-containing protein 5-like protein n=2 Ta... [more]
A0A3P8IC90_9BILA3.650e-1270.21Uncharacterized protein n=2 Tax=Soboliphyme baturi... [more]
A0A8D0CJU3_SCLFO4.370e-1259.32WD repeat-containing protein 5 n=2 Tax=Osteoglosso... [more]
A0A0P7XGI4_SCLFO5.160e-1264.81WD repeat-containing protein 5 n=2 Tax=Scleropages... [more]
A0A8C9S0A1_SCLFO5.240e-1264.81WD repeat-containing protein 5 n=1 Tax=Scleropages... [more]
G5DZI1_9PIPI5.780e-1269.57Putative wd repeat domain 5 (Fragment) n=1 Tax=Pip... [more]
UPI001E1E243B5.880e-1261.40WD repeat-containing protein 5 n=1 Tax=Homo sapien... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 167..181
score: 37.97
coord: 41..55
score: 42.53
coord: 256..270
score: 40.9
IPR001632G-protein, beta subunitPRINTSPR00319GPROTEINBcoord: 167..181
score: 52.53
coord: 148..164
score: 26.56
coord: 205..222
score: 31.99
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 57..96
e-value: 2.8E-9
score: 46.8
coord: 99..138
e-value: 5.0E-11
score: 52.6
coord: 183..223
e-value: 9.7E-7
score: 38.4
coord: 15..54
e-value: 7.5E-13
score: 58.7
coord: 226..269
e-value: 0.0041
score: 26.3
coord: 141..180
e-value: 4.4E-11
score: 52.8
coord: 272..313
e-value: 1.7E-4
score: 30.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 101..138
e-value: 2.3E-7
score: 31.4
coord: 227..269
e-value: 1.6E-4
score: 22.4
coord: 184..223
e-value: 1.6E-6
score: 28.7
coord: 18..54
e-value: 6.1E-12
score: 45.9
coord: 63..96
e-value: 5.8E-8
score: 33.3
coord: 276..312
e-value: 2.9E-4
score: 21.6
coord: 142..180
e-value: 2.5E-9
score: 37.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 106..147
score: 15.186998
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 148..189
score: 17.760201
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 191..232
score: 13.716598
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 22..63
score: 18.629074
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 64..105
score: 14.552052
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 256..278
score: 10.441614
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..316
e-value: 1.7E-130
score: 436.4
NoneNo IPR availablePIRSFPIRSF002394GNBP_Bcoord: 3..315
e-value: 1.2E-79
score: 265.5
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 6..316
NoneNo IPR availablePANTHERPTHR22847:SF560WD REPEAT-CONTAINING PROTEIN 5coord: 6..316
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 191..228
score: 10.205597
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 64..99
score: 10.891048
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 148..185
score: 13.39558
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 106..143
score: 11.602863
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 22..54
score: 14.634665
NoneNo IPR availableCDDcd00200WD40coord: 21..313
e-value: 1.10486E-99
score: 293.472
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 256..270
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 167..181
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..312

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:60389..61366 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1Gcaud2607.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 60389..61366 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MRPQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTI
RIWDALTGRERVTLSGHLQGISDLSWSSDSKYICSASDDKSIRIYDVDSA
KCIMTLRGHTHYVFCVNFNPQSNLIVSGSFDESVRIFDVRQGQTLKILPA
HNDPVSAVHFSRDGTLIVSSSYDGSVRVWDTASGKLLKTLVGEDNPPVSF
VKFSPNGNYILAGTLDHSLRLWDYASGKVLKTYTGHLNHRYCIFSTFVVT
HEVKHIASGSEDGNVYLWDLQSKRVIQKLEGHTDVVLAVAAHPTHSILAS
GALEKDKTVKLWAAQCDYPHQTPTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001632Gprotein_B
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf