Gcaud2607.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2607.t1
Unique NameGcaud2607.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:60389..61366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10029.XP_007618592.1
Preferred nameWDR5
PFAMsWD40
Max annot lvl33208|Metazoa
KEGG koko:K14963
KEGG Pathwayko04934,map04934
GOsGO:0000123,GO:0001085,GO:0001501,GO:0001654,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005737,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0007568,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008340,GO:0008757,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060290,GO:0060429,GO:0061136,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
Evalue5.41e-12
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,38D84@33154|Opisthokonta,3BCYJ@33208|Metazoa,3CUP4@33213|Bilateria,482F1@7711|Chordata,48Y0M@7742|Vertebrata,3J5EM@40674|Mammalia,3595B@314146|Euarchontoglires,4PYWB@9989|Rodentia
DescriptionWD repeat-containing protein 5
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2607Gcaud2607Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 60389..61366 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1.start1Gcaud2607.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 60389..60391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1.CDS1Gcaud2607.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 60389..61366 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1.exon1Gcaud2607.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 60389..61366 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1.stop1Gcaud2607.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 61364..61366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2607.t1Gcaud2607.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 60389..61366 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp
MRPQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTI
RIWDALTGRERVTLSGHLQGISDLSWSSDSKYICSASDDKSIRIYDVDSA
KCIMTLRGHTHYVFCVNFNPQSNLIVSGSFDESVRIFDVRQGQTLKILPA
HNDPVSAVHFSRDGTLIVSSSYDGSVRVWDTASGKLLKTLVGEDNPPVSF
VKFSPNGNYILAGTLDHSLRLWDYASGKVLKTYTGHLNHRYCIFSTFVVT
HEVKHIASGSEDGNVYLWDLQSKRVIQKLEGHTDVVLAVAAHPTHSILAS
GALEKDKTVKLWAAQCDYPHQTPTS*
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spliced messenger RNA

>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:60389..61366+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCGCAGGTACAAACCGACGGCACGCACATGTTGCCCAACTACTC
GCTGCAGTACACGCTGAGCGGGCACAAGAAGGCAATCTCCTCCGTGAAGT
TTTCGCCCAACGGGCAGTTTCTGGCGTCGTCCTCTGCCGACAAGACCATT
CGCATCTGGGACGCGCTCACCGGTCGGGAGCGCGTCACGCTCAGCGGTCA
TTTGCAGGGCATCTCCGACCTGTCGTGGTCGTCCGATAGCAAGTATATCT
GCTCCGCTTCCGACGACAAGTCCATTCGTATCTACGACGTGGACTCTGCA
AAATGCATCATGACGCTGCGCGGCCACACGCACTACGTGTTTTGCGTCAA
CTTCAACCCGCAAAGCAATCTGATTGTGTCGGGCAGTTTCGACGAGTCGG
TCAGAATCTTCGACGTGAGACAGGGTCAAACGCTCAAGATTCTGCCCGCG
CACAATGATCCGGTGTCCGCGGTGCATTTCTCCCGcgacggaacgctcat
tgtgtccagttcgtacgacggatctgtgcgcgtctgggacacTGCGTCGG
GCAAGTTGCTCAAGACATTGGTGGGCGAGGACAATCCACCCGTTTCGTTT
GTAAAGTTCAGTCCCAACGGCAACTACATTCTGGCAGGCACGTTGGATCA
CTCGTTGCGACTGTGGGACTACGCGAGTGGAAAGGTGCTCAAGACGTACA
CGGGCCACTTGAATCATCGCTACTGCATATTTTCTACGTTTGTGGTGACG
CATGAAGTGAAACACATTGCCAGCGGCAGTGAGGATGGGAACGTTTACCT
GTGGGACCTGCAATCAAAACGGGTGATACAAAAGCTGGAGGGCCACACGG
ACGTGGTGTTGGCCGTGGCTGCGCACCCCACGCACAGCATTCTTGCCTCT
GGCGCGCTGGAGAAGGACAAGACGGTCAAACTATGGGCGGCGCAATGTGA
CTACCCGCACCAAACGCCAACGTCATGA
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protein sequence of Gcaud2607.t1

>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MRPQVQTDGTHMLPNYSLQYTLSGHKKAISSVKFSPNGQFLASSSADKTI
RIWDALTGRERVTLSGHLQGISDLSWSSDSKYICSASDDKSIRIYDVDSA
KCIMTLRGHTHYVFCVNFNPQSNLIVSGSFDESVRIFDVRQGQTLKILPA
HNDPVSAVHFSRDGTLIVSSSYDGSVRVWDTASGKLLKTLVGEDNPPVSF
VKFSPNGNYILAGTLDHSLRLWDYASGKVLKTYTGHLNHRYCIFSTFVVT
HEVKHIASGSEDGNVYLWDLQSKRVIQKLEGHTDVVLAVAAHPTHSILAS
GALEKDKTVKLWAAQCDYPHQTPTS*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:60389..61366+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:60389..61366+ (Gracilaria caudata M_176_S67 male)
ATGCGTCCGCAGGTACAAACCGACGGCACGCACATGTTGCCCAACTACTC
GCTGCAGTACACGCTGAGCGGGCACAAGAAGGCAATCTCCTCCGTGAAGT
TTTCGCCCAACGGGCAGTTTCTGGCGTCGTCCTCTGCCGACAAGACCATT
CGCATCTGGGACGCGCTCACCGGTCGGGAGCGCGTCACGCTCAGCGGTCA
TTTGCAGGGCATCTCCGACCTGTCGTGGTCGTCCGATAGCAAGTATATCT
GCTCCGCTTCCGACGACAAGTCCATTCGTATCTACGACGTGGACTCTGCA
AAATGCATCATGACGCTGCGCGGCCACACGCACTACGTGTTTTGCGTCAA
CTTCAACCCGCAAAGCAATCTGATTGTGTCGGGCAGTTTCGACGAGTCGG
TCAGAATCTTCGACGTGAGACAGGGTCAAACGCTCAAGATTCTGCCCGCG
CACAATGATCCGGTGTCCGCGGTGCATTTCTCCCGcgacggaacgctcat
tgtgtccagttcgtacgacggatctgtgcgcgtctgggacacTGCGTCGG
GCAAGTTGCTCAAGACATTGGTGGGCGAGGACAATCCACCCGTTTCGTTT
GTAAAGTTCAGTCCCAACGGCAACTACATTCTGGCAGGCACGTTGGATCA
CTCGTTGCGACTGTGGGACTACGCGAGTGGAAAGGTGCTCAAGACGTACA
CGGGCCACTTGAATCATCGCTACTGCATATTTTCTACGTTTGTGGTGACG
CATGAAGTGAAACACATTGCCAGCGGCAGTGAGGATGGGAACGTTTACCT
GTGGGACCTGCAATCAAAACGGGTGATACAAAAGCTGGAGGGCCACACGG
ACGTGGTGTTGGCCGTGGCTGCGCACCCCACGCACAGCATTCTTGCCTCT
GGCGCGCTGGAGAAGGACAAGACGGTCAAACTATGGGCGGCGCAATGTGA
CTACCCGCACCAAACGCCAACGTCATGA
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:60389..61366+

>Gcaud2607.t1 ID=Gcaud2607.t1|Name=Gcaud2607.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=978bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:60389..61366+ (Gracilaria caudata M_176_S67 male)
ATGCGTCCGCAGGTACAAACCGACGGCACGCACATGTTGCCCAACTACTC
GCTGCAGTACACGCTGAGCGGGCACAAGAAGGCAATCTCCTCCGTGAAGT
TTTCGCCCAACGGGCAGTTTCTGGCGTCGTCCTCTGCCGACAAGACCATT
CGCATCTGGGACGCGCTCACCGGTCGGGAGCGCGTCACGCTCAGCGGTCA
TTTGCAGGGCATCTCCGACCTGTCGTGGTCGTCCGATAGCAAGTATATCT
GCTCCGCTTCCGACGACAAGTCCATTCGTATCTACGACGTGGACTCTGCA
AAATGCATCATGACGCTGCGCGGCCACACGCACTACGTGTTTTGCGTCAA
CTTCAACCCGCAAAGCAATCTGATTGTGTCGGGCAGTTTCGACGAGTCGG
TCAGAATCTTCGACGTGAGACAGGGTCAAACGCTCAAGATTCTGCCCGCG
CACAATGATCCGGTGTCCGCGGTGCATTTCTCCCGcgacggaacgctcat
tgtgtccagttcgtacgacggatctgtgcgcgtctgggacacTGCGTCGG
GCAAGTTGCTCAAGACATTGGTGGGCGAGGACAATCCACCCGTTTCGTTT
GTAAAGTTCAGTCCCAACGGCAACTACATTCTGGCAGGCACGTTGGATCA
CTCGTTGCGACTGTGGGACTACGCGAGTGGAAAGGTGCTCAAGACGTACA
CGGGCCACTTGAATCATCGCTACTGCATATTTTCTACGTTTGTGGTGACG
CATGAAGTGAAACACATTGCCAGCGGCAGTGAGGATGGGAACGTTTACCT
GTGGGACCTGCAATCAAAACGGGTGATACAAAAGCTGGAGGGCCACACGG
ACGTGGTGTTGGCCGTGGCTGCGCACCCCACGCACAGCATTCTTGCCTCT
GGCGCGCTGGAGAAGGACAAGACGGTCAAACTATGGGCGGCGCAATGTGA
CTACCCGCACCAAACGCCAACGTCATGA
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