Gcaud2605.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2605.t1
Unique NameGcaud2605.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length69
Homology
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A2V3IWG8_9FLOR (Cytochrome b-c1 complex subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWG8_9FLOR)

HSP 1 Score: 139 bits (351), Expect = 4.260e-42
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            MDDDPVD KPQIE+NCRP+CTK WSEYEACIGRV+NDT+GEAHCTGQ+LDFWKCIDKCA PK+FAT+K
Sbjct:    1 MDDDPVDPKPQIEENCRPKCTKQWSEYEACIGRVENDTTGEAHCTGQFLDFWKCIDKCATPKLFATLK 68          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A5J4Z6H9_PORPP (Cytochrome b-c1 complex subunit 6 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6H9_PORPP)

HSP 1 Score: 105 bits (263), Expect = 1.150e-28
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            M D+ VD +P+IE+ C+PQC+K  +EYEAC  R+K+DT+GEAHCTGQYLD + CIDKCA+PKVF+T+K
Sbjct:    1 MADEVVDLRPEIEEKCKPQCSKVIAEYEACKERIKSDTTGEAHCTGQYLDLFACIDKCAMPKVFSTLK 68          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A1X6P4Q9_PORUM (Cytochrome b-c1 complex subunit 6 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4Q9_PORUM)

HSP 1 Score: 105 bits (262), Expect = 1.640e-28
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    1 MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            MDDDPVD KP IE+ C+P C++ W++YEACI RV      EAHCTGQYLDFWKC+D CA  K+FA +K
Sbjct:    1 MDDDPVDTKPTIEEACKPGCSQRWADYEACIKRVAASGDEEAHCTGQYLDFWKCVDVCAAKKIFAPLK 68          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A830HC88_9CHLO (UCR_hinge domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HC88_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 7.310e-28
Identity = 36/67 (53.73%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    2 DDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            ++DPVD KP++E+ C+P+C K+  +YEAC+ R+K+DT+GEAHCTGQY D+W C+D C  PK+F  ++
Sbjct:   18 EEDPVDTKPELEEQCKPKCAKFLVDYEACVDRIKSDTTGEAHCTGQYFDYWSCVDTCVAPKLFGKLQ 84          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A2P6TNA6_CHLSO (Cytochrome b-c1 complex subunit 6 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNA6_CHLSO)

HSP 1 Score: 101 bits (251), Expect = 7.810e-27
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    1 MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            M D+ V+ + ++E++C+PQC K W EY+AC  RV+ D SGEAHCTGQY DFW CID+CA PK+FA +K
Sbjct:    1 MADEEVNPQIEVEESCKPQCVKAWLEYQACAERVEKDESGEAHCTGQYFDFWHCIDQCAAPKLFAQLK 68          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A7S3QPS8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QPS8_DUNTE)

HSP 1 Score: 102 bits (254), Expect = 8.360e-27
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    7 DNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            D KPQIE+ C+P C K W EY+AC+ R++ DT+G+AHC+GQY DFW C+D CA PK+F+ +K
Sbjct:   47 DQKPQIEEECKPHCVKQWQEYKACVERIQGDTTGQAHCSGQYFDFWHCVDHCAAPKIFSRLK 108          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A2R5GQT1_9STRA (Cytochrome b-c1 complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQT1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.490e-26
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 0
Query:    1 MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            M DDPVD +P+IE+ C+P C KYW EYEAC  RV+    GE HC+GQY DF+ CID CA PKVF T+K
Sbjct:    1 MSDDPVDPRPEIEEACKPGCQKYWKEYEACAERVQ--AKGEGHCSGQYFDFYHCIDACAAPKVFKTVK 66          
BLAST of Gcaud2605.t1 vs. uniprot
Match: D8TTR5_VOLCA (Cytochrome b-c1 complex subunit 6 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TTR5_VOLCA)

HSP 1 Score: 99.4 bits (246), Expect = 4.640e-26
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 0
Query:    2 DDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            +DDP   KP+IE++C+  C K W+ Y+AC  R+K+DT+G+AHC+GQY DFWKC+D CA PK+FA +K
Sbjct:    6 EDDP---KPKIEEDCKVHCVKEWAAYKACAERIKSDTTGQAHCSGQYFDFWKCVDHCAAPKIFAVLK 69          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A061R170_9CHLO (Cytochrome b-c1 complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R170_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 6.600e-26
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    2 DDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            D+DPV  KP++E+ C+P C K   EY+AC+ R++ DT+GEAHCTGQY D+W CIDKCA   +FA +K
Sbjct:    3 DEDPVCPKPELEEKCKPSCVKALVEYQACVERIEKDTTGEAHCTGQYFDYWSCIDKCAAAPLFAQLK 69          
BLAST of Gcaud2605.t1 vs. uniprot
Match: A0A251IRM7_MANES (Cytochrome b-c1 complex subunit 6 n=3 Tax=Crotonoideae TaxID=235631 RepID=A0A251IRM7_MANES)

HSP 1 Score: 98.6 bits (244), Expect = 9.380e-26
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    2 DDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLDFWKCIDKCAVPKVFATIK 68
            D++PVD K  +E++C+P+C K   EYEAC+ R+K+D SG  HCTGQY D+W CIDKC  PK+F+ +K
Sbjct:    3 DEEPVDQKKYLEESCKPKCVKPLLEYEACVKRIKDDDSGHKHCTGQYFDYWSCIDKCVAPKLFSKLK 69          
The following BLAST results are available for this feature:
BLAST of Gcaud2605.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWG8_9FLOR4.260e-4285.29Cytochrome b-c1 complex subunit 6 n=1 Tax=Gracilar... [more]
A0A5J4Z6H9_PORPP1.150e-2864.71Cytochrome b-c1 complex subunit 6 n=1 Tax=Porphyri... [more]
A0A1X6P4Q9_PORUM1.640e-2863.24Cytochrome b-c1 complex subunit 6 n=1 Tax=Porphyra... [more]
A0A830HC88_9CHLO7.310e-2853.73UCR_hinge domain-containing protein n=1 Tax=Pycnoc... [more]
A0A2P6TNA6_CHLSO7.810e-2758.82Cytochrome b-c1 complex subunit 6 n=1 Tax=Chlorell... [more]
A0A7S3QPS8_DUNTE8.360e-2758.06Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A2R5GQT1_9STRA1.490e-2661.76Cytochrome b-c1 complex subunit 6 n=1 Tax=Hondaea ... [more]
D8TTR5_VOLCA4.640e-2656.72Cytochrome b-c1 complex subunit 6 n=1 Tax=Volvox c... [more]
A0A061R170_9CHLO6.600e-2656.72Cytochrome b-c1 complex subunit 6 n=1 Tax=Tetrasel... [more]
A0A251IRM7_MANES9.380e-2655.22Cytochrome b-c1 complex subunit 6 n=3 Tax=Crotonoi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyGENE3D1.10.287.20coord: 1..68
e-value: 8.2E-21
score: 75.9
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilySUPERFAMILY81531Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 2..68
IPR003422Cytochrome b-c1 complex, subunit 6PIRSFPIRSF000019Bc1_11Kcoord: 1..68
e-value: 5.0E-26
score: 86.7
IPR003422Cytochrome b-c1 complex, subunit 6PANTHERPTHR15336UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEINcoord: 2..68
IPR023184Ubiquinol-cytochrome C reductase hinge domainPFAMPF02320UCR_hingecoord: 7..68
e-value: 9.3E-20
score: 70.6
NoneNo IPR availablePANTHERPTHR15336:SF8CYTOCHROME B-C1 COMPLEX SUBUNIT 6coord: 2..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:58272..58671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1Gcaud2605.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 58272..58671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=69bp
MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLD
FWKCIDKCAVPKVFATIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036811Ubol_cytC_Rdtase_hinge_dom_sf
IPR003422Cyt_b-c1_6
IPR023184Ubol_cytC_Rdtase_hinge_dom