Gcaud2605.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2605.t1
Unique NameGcaud2605.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:58272..58671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706663.1
Preferred nameUQCRH
PFAMsUCR_hinge
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014,RC00017,RC02950
KEGG koko:K00416,ko:K01897,ko:K08730
KEGG TC4.C.1.1
KEGG ReactionR01280,R07376
KEGG Pathwayko00061,ko00071,ko00190,ko00564,ko01100,ko01110,ko01212,ko02024,ko03320,ko04146,ko04216,ko04260,ko04714,ko04920,ko04932,ko05010,ko05012,ko05016,map00061,map00071,map00190,map00564,map01100,map01110,map01212,map02024,map03320,map04146,map04216,map04260,map04714,map04920,map04932,map05010,map05012,map05016
KEGG ModuleM00086,M00152
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034399,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0051259,GO:0051291,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue3.05e-31
EggNOG OGsKOG4763@1|root,KOG4763@2759|Eukaryota
EC2.7.8.29,6.2.1.3
Descriptionubiquinol-cytochrome-c reductase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2605Gcaud2605Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 58272..58671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1Gcaud2605.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 58272..58671 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1.start1Gcaud2605.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 58272..58274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1.CDS1Gcaud2605.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 58272..58337 +
Gcaud2605.t1.CDS2Gcaud2605.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 58447..58554 +
Gcaud2605.t1.CDS3Gcaud2605.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 58639..58671 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1.exon1Gcaud2605.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 58272..58337 +
Gcaud2605.t1.exon2Gcaud2605.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 58447..58554 +
Gcaud2605.t1.exon3Gcaud2605.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 58639..58671 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1.intron1Gcaud2605.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_53_length_63756_cov_4.464180 58338..58446 +
Gcaud2605.t1.intron2Gcaud2605.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_53_length_63756_cov_4.464180 58555..58638 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2605.t1.stop1Gcaud2605.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 58669..58671 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=69bp
MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLD
FWKCIDKCAVPKVFATIK*
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spliced messenger RNA

>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=207bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58272..58671+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGATCCGGTGGACAACAAGCCGCAGATCGAGGACAATTGCCG
ACCGCAATGCACCAAGTACTGGTCGGAGTACGAGGCGTGCATCGGAAGAG
TGAAGAACGACACCAGCGGCGAGGCTCACTGCACCGGACAGTACCTCGAC
TTTTGGAAGTGCATTGACAAATGCGCCGTTCCCAAGGTGTTTGCCACCAT
CAAGTAG
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protein sequence of Gcaud2605.t1

>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=69bp
MDDDPVDNKPQIEDNCRPQCTKYWSEYEACIGRVKNDTSGEAHCTGQYLD
FWKCIDKCAVPKVFATIK*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:58272..58671+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58272..58671+ (Gracilaria caudata M_176_S67 male)
ATGGATGACGATCCGGTGGACAACAAGCCGCAGATCGAGGACAATTGCCG
ACCGCAATGCACCAAGGTACGTCACCACGCGCCGCCCACGCACTTTCAGC
TTTTCGTTTCCATAGTCGCTAACGGCGCCAACGCTTACGCGCGATCGCGC
GCTCATCTGCTCGCGCACACCGCAGTACTGGTCGGAGTACGAGGCGTGCA
TCGGAAGAGTGAAGAACGACACCAGCGGCGAGGCTCACTGCACCGGACAG
TACCTCGACTTTTGGAAGTGCATTGACAAATGCGTACGTCCCGATTCTCC
CACCTCAACGACAAAACCCGCAAGCACGCCTTCTAACGACAAGCGTTTTC
ACCGCCCCTTGCAACAGGCCGTTCCCAAGGTGTTTGCCACCATCAAGTAG
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:58272..58671+

>Gcaud2605.t1 ID=Gcaud2605.t1|Name=Gcaud2605.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=207bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:58272..58671+ (Gracilaria caudata M_176_S67 male)
ATGGATGACGATCCGGTGGACAACAAGCCGCAGATCGAGGACAATTGCCG
ACCGCAATGCACCAAGTACTGGTCGGAGTACGAGGCGTGCATCGGAAGAG
TGAAGAACGACACCAGCGGCGAGGCTCACTGCACCGGACAGTACCTCGAC
TTTTGGAAGTGCATTGACAAATGCGCCGTTCCCAAGGTGTTTGCCACCAT
CAAGTAG
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