Gcaud2592.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2592.t1
Unique NameGcaud2592.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length414
Homology
BLAST of Gcaud2592.t1 vs. uniprot
Match: A0A2V3IWI1_9FLOR (PH_TFIIH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWI1_9FLOR)

HSP 1 Score: 630 bits (1626), Expect = 3.810e-225
Identity = 308/413 (74.58%), Postives = 359/413 (86.92%), Query Frame = 0
Query:    1 MADFEIERRCAFEKRPGIVQLSATNLVWTPDSAAYGREQRVPFTAISQFQVSKEGSAKKAMIRLTCSDRPNKITLDFGTSFTDRDAVRDVLNRLQSAPAFAPPVVQQPPKRPLSDKQKAWRTSLLQKKEVRQMHQRLVLTGAVTEETFWKGMKFRYTPKGELKNPNEPLDNAEALNETGVPSDAFTATKSCDDLKWDTVPSPAQRHQLFLAHPAVKRAFLHKKIGFDDEKMWALFAASSMAPRSARLKSKRDSVRAGAADAFFAPFQAKEAERAIADREKSIHNLHSTLAIDRFDDHRTEHIHDPHPPKRARVSDALRLMRMVNTHGGMIVGEGWKDSNERPLEDLVTEAEKPFAPLDVRENAPKRQTAVLDSNVAVAFSDAMTHWRADVARFSDPIALSGDVLRKLNDSMRP 413
            M++FEIERRC+FEKRPGIV LSAT+LVWTP+SAA GRE RVPFTAISQFQVSKEGSAKKAMIRLTCSDRPNKITLDF TSFTDRDAVRD+LNRLQSAPA APP +  PP +PL+ +Q+ WRT+LL++K+VRQMHQRLVL+ AV+E+ FWKGMKFRYTPK E +NP EPL++A+ L+ETGVPSDAFT + SCDDLKWDTVP+PAQRH +FLA PAVKRAFL +   FDD  +WALF+ASSMAPRSAR++SKRD+VRAG ADAFFAP+QA+EAERA  +RE+S+ NLHS +AI+RFDDHRTEH+ DPHPPKRARVSDALRLMRMVNTHG MIVGEGWKD+ ERPLEDLV +  +PF  L V+E+A KR+   +D  +A+AFSDAMTHW ADVARFS+PI  SG +L KL  SMRP
Sbjct:    1 MSEFEIERRCSFEKRPGIVHLSATHLVWTPNSAADGRELRVPFTAISQFQVSKEGSAKKAMIRLTCSDRPNKITLDFATSFTDRDAVRDLLNRLQSAPAPAPPPIHAPPAQPLTARQRLWRTALLKRKDVRQMHQRLVLSRAVSEDVFWKGMKFRYTPKAEPRNPTEPLEHADLLHETGVPSDAFTPSPSCDDLKWDTVPTPAQRHHIFLAFPAVKRAFLQRNATFDDHHLWALFSASSMAPRSARVRSKRDTVRAGEADAFFAPYQAREAERAQKEREQSVRNLHSDIAINRFDDHRTEHVQDPHPPKRARVSDALRLMRMVNTHGSMIVGEGWKDTLERPLEDLVDQPPRPFTKLAVQESATKREAHAIDHGIALAFSDAMTHWSADVARFSEPIHTSGQILHKLVKSMRP 413          
BLAST of Gcaud2592.t1 vs. uniprot
Match: A0A7S1TGP5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGP5_9RHOD)

HSP 1 Score: 81.6 bits (200), Expect = 3.900e-13
Identity = 97/407 (23.83%), Postives = 182/407 (44.72%), Query Frame = 0
Query:   12 FEKRPGIVQLSATNLVWTPDSAAYGREQ-RVPFTAISQFQVSKEGSAKKAMIRLTCSDRPNKITLDFGTS-----FTDRDAVRDVLNRLQ----SAPAFAPP------VVQQPPKRP-----------LSDKQKAWRTSLLQKK-EVRQMHQRLVLTGAVTEETFWKGMKFRYTPKGELKNPNEPLDNAEALNETGVPSDAFTATKSCDDL--KWDTVPSPAQRHQLFLAHPAVKRAF---LHKKIGFDDEKMWALFAASSMAPRSARLKSKRDSVRAGAADAFFAPFQAKEAERAIADREKSIHNLHSTLAIDRFDDHRTEHIHDPHPP------KRARVSDALRLMRMVNTHGGMIVGEG---------------WKDSNERP-LEDLVTEAEKPFAPLDVRENA 363
            F+K  G + +    + W   +    RE  +V ++ I+  + SKEG  K A I+L        +  DF T+     F  R+ +++ LNR +    S P   P       V+ +   RP           +S ++   R  +L K  E+R++H+ LV    ++++ F+K +KFR   + + +N    LD+A  L E G+P+      K+ ++   +   + +PA  HQ+FLAHPAV RA+   +  K+  +    +  F  SS+  R       R    A  AD  F+ ++ ++A+    +  + +  +  ++ + + D H   H+   H        +  + +  L L R +N HG +++  G               W++   R  LEDL+   + P  PL++++++
Sbjct:   13 FDKTNGEIVVGKDAMTWKAIAPQASREGVQVEYSEIATQKASKEGG-KMAAIKLDLQSG-GSLMFDFRTANGLPDFETRNRLKNFLNRAKDQRLSDPTPDPALNRTQEVLDRASSRPRVEERSIRVNEISQRELLQRAEILMKNAEIRKLHEFLVGKRLISDDEFFKAVKFRLKRESQDENA---LDDAIQL-ERGLPTSMSDPLKAAEESVERKKFILTPAAIHQIFLAHPAVHRAYRDLVPSKM--NQAVFFQKFLESSLYNRD------RLGAAASQADELFSKYEVEDADAYRREIGERVGMIEVSINLTKQDPHEQIHLKGRHAEDSDVAIQSRKNAPFLPLARYINRHGTLVIDAGGKSSGGGESHAVHTPWREETHREVLEDLLPAPQLPTIPLEIQQSS 405          
The following BLAST results are available for this feature:
BLAST of Gcaud2592.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWI1_9FLOR3.810e-22574.58PH_TFIIH domain-containing protein n=1 Tax=Gracila... [more]
A0A7S1TGP5_9RHOD3.900e-1323.83Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 12..91
e-value: 1.2E-10
score: 41.6
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 5..97
e-value: 3.4E-6
score: 28.9
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 9..351
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 9..351
NoneNo IPR availableCDDcd13229PH_TFIIHcoord: 10..97
e-value: 3.61873E-9
score: 51.5033
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 7..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:23435..24676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2592.t1Gcaud2592.t1Gracilaria caudata M_176_S67 malemRNANODE_53_length_63756_cov_4.464180 23435..24676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MADFEIERRCAFEKRPGIVQLSATNLVWTPDSAAYGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRPNKITLDFGTSFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKRPLSDKQKAWRTSLLQKKEVRQMHQRLVLTGAVTEETFWK
GMKFRYTPKGELKNPNEPLDNAEALNETGVPSDAFTATKSCDDLKWDTVP
SPAQRHQLFLAHPAVKRAFLHKKIGFDDEKMWALFAASSMAPRSARLKSK
RDSVRAGAADAFFAPFQAKEAERAIADREKSIHNLHSTLAIDRFDDHRTE
HIHDPHPPKRARVSDALRLMRMVNTHGGMIVGEGWKDSNERPLEDLVTEA
EKPFAPLDVRENAPKRQTAVLDSNVAVAFSDAMTHWRADVARFSDPIALS
GDVLRKLNDSMRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013876TFIIH_BTF_p62_N
IPR011993PH-like_dom_sf
IPR027079Tfb1/GTF2H1