Gcaud2592.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2592.t1
Unique Name	Gcaud2592.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:23435..24676 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008378918.1
PFAMs	BSD,PH_TFIIH
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03141
KEGG Pathway	ko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG Module	M00290
GOs	GO:0000428,GO:0000439,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006351,GO:0006355,GO:0006357,GO:0006360,GO:0006366,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue	1.67e-05
EggNOG OGs	KOG2074@1\|root,KOG2074@2759\|Eukaryota,37JZQ@33090\|Viridiplantae,3GGFA@35493\|Streptophyta,4JHRB@91835\|fabids
Description	RNA polymerase II transcription factor B subunit
COG category	KL
BRITE	ko00000,ko00001,ko00002,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2592	Gcaud2592	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 23435..24676 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2592.t1.stop1	Gcaud2592.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 23435..23437 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2592.t1.CDS1	Gcaud2592.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 23435..24676 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2592.t1.exon1	Gcaud2592.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 23435..24676 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2592.t1.start1	Gcaud2592.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 24674..24676 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2592.t1	Gcaud2592.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 23435..24676 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:23435..24676-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:23435..24676-

mRNA sequence

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp
MADFEIERRCAFEKRPGIVQLSATNLVWTPDSAAYGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRPNKITLDFGTSFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKRPLSDKQKAWRTSLLQKKEVRQMHQRLVLTGAVTEETFWK
GMKFRYTPKGELKNPNEPLDNAEALNETGVPSDAFTATKSCDDLKWDTVP
SPAQRHQLFLAHPAVKRAFLHKKIGFDDEKMWALFAASSMAPRSARLKSK
RDSVRAGAADAFFAPFQAKEAERAIADREKSIHNLHSTLAIDRFDDHRTE
HIHDPHPPKRARVSDALRLMRMVNTHGGMIVGEGWKDSNERPLEDLVTEA
EKPFAPLDVRENAPKRQTAVLDSNVAVAFSDAMTHWRADVARFSDPIALS
GDVLRKLNDSMRP*

spliced messenger RNA

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:23435..24676- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACTTCGAGATTGAGCGTCGCTGCGCCTTTGAGAAACGCCCGGG
TATCGTGCAGCTGTCCGCCACCAACCTTGTTTGGACGCCGGACTCCGCCG
CCTATGGCCGCGAGCAGCGTGTGCCCTTCACTGCTATATCACAGTTTCAA
GTGTCCAAGGAGGGATCTGCCAAGAAGGCCATGATCCGACTCACGTGTTC
TGATAGACCCAACAAAATCACTCTTGACTTTGGCACTAGTTTCACTGATA
GGGATGCGGTGCGCGACGTGCTGAATAGGCTTCAATCCGCGCCAGCTTTT
GCGCCGCCTGTTGTGCAACAGCCGCCAAAGCGGCCGCTTTCCGACAAGCA
GAAAGCTTGGAGAACTTCCTTGCTACAGAAGAAGGAAGTACGTCAAATGC
ACCAGCGCCTTGTGTTGACCGGCGCCGTCACAGAGGAGACCTTTTGGAAG
GGTATGAAATTTCGATACACTCCGAAAGGCGAGCTCAAGAATCCGAATGA
ACCTCTTGACAATGCTGAAGCTCTCAATGAAACTGGAGTTCCTTCAGACG
CATTCACTGCCACTAAGTCGTGTGACGACCTCAAGTGGGATACTGTTCCA
TCTCCAGCACAACGACATCAACTATTCCTCGCCCATCCGGCAGTGAAACG
AGCTTTCTTACACAAAAAGATCGGTTTTGATGATGAGAAAATGTGGGCGT
TGTTCGCAGCTTCCAGTATGGCCCCTCGCAGTGCCCGCCTCAAGTCTAAA
CGCGACTCTGTTCGAGCAGGTGCGGCCGATGCGTTTTTCGCCCCCTTCCA
GGCTAAGGAAGCGGAAAGGGCCATAGCAGATCGTGAGAAAAGCATACACA
ATCTGCACTCCACTTTGGCTATTGATCGATTTGATGATCATCGAACGGAA
CATATCCATGACCCGCACCCGCCCAAGAGAGCGCGCGTATCCGATGCTTT
GCGCTTAATGCGAATGGTAAATACCCATGGTGGTATGATTGTTGGAGAAG
GGTGGAAGGACAGCAATGAACGACCACTTGAAGACCTGGTCACGGAGGCT
GAAAAACCGTTTGCCCCTCTCGATGTCCGAGAAAATGCTCCAAAGCGTCA
GACCGCTGTCTTGGATTCAAATGTTGCTGTGGCCTTTTCGGATGCCATGA
CACATTGGCGAGCCGATGTTGCCCGCTTTTCTGACCCTATTGCTTTAAGT
GGAGATGTGCTGAGGAAACTGAACGACTCCATGAGACCATGA

protein sequence of Gcaud2592.t1

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MADFEIERRCAFEKRPGIVQLSATNLVWTPDSAAYGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRPNKITLDFGTSFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKRPLSDKQKAWRTSLLQKKEVRQMHQRLVLTGAVTEETFWK
GMKFRYTPKGELKNPNEPLDNAEALNETGVPSDAFTATKSCDDLKWDTVP
SPAQRHQLFLAHPAVKRAFLHKKIGFDDEKMWALFAASSMAPRSARLKSK
RDSVRAGAADAFFAPFQAKEAERAIADREKSIHNLHSTLAIDRFDDHRTE
HIHDPHPPKRARVSDALRLMRMVNTHGGMIVGEGWKDSNERPLEDLVTEA
EKPFAPLDVRENAPKRQTAVLDSNVAVAFSDAMTHWRADVARFSDPIALS
GDVLRKLNDSMRP*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:23435..24676-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:23435..24676- (Gracilaria caudata M_176_S67 male)
ATGGCCGACTTCGAGATTGAGCGTCGCTGCGCCTTTGAGAAACGCCCGGG
TATCGTGCAGCTGTCCGCCACCAACCTTGTTTGGACGCCGGACTCCGCCG
CCTATGGCCGCGAGCAGCGTGTGCCCTTCACTGCTATATCACAGTTTCAA
GTGTCCAAGGAGGGATCTGCCAAGAAGGCCATGATCCGACTCACGTGTTC
TGATAGACCCAACAAAATCACTCTTGACTTTGGCACTAGTTTCACTGATA
GGGATGCGGTGCGCGACGTGCTGAATAGGCTTCAATCCGCGCCAGCTTTT
GCGCCGCCTGTTGTGCAACAGCCGCCAAAGCGGCCGCTTTCCGACAAGCA
GAAAGCTTGGAGAACTTCCTTGCTACAGAAGAAGGAAGTACGTCAAATGC
ACCAGCGCCTTGTGTTGACCGGCGCCGTCACAGAGGAGACCTTTTGGAAG
GGTATGAAATTTCGATACACTCCGAAAGGCGAGCTCAAGAATCCGAATGA
ACCTCTTGACAATGCTGAAGCTCTCAATGAAACTGGAGTTCCTTCAGACG
CATTCACTGCCACTAAGTCGTGTGACGACCTCAAGTGGGATACTGTTCCA
TCTCCAGCACAACGACATCAACTATTCCTCGCCCATCCGGCAGTGAAACG
AGCTTTCTTACACAAAAAGATCGGTTTTGATGATGAGAAAATGTGGGCGT
TGTTCGCAGCTTCCAGTATGGCCCCTCGCAGTGCCCGCCTCAAGTCTAAA
CGCGACTCTGTTCGAGCAGGTGCGGCCGATGCGTTTTTCGCCCCCTTCCA
GGCTAAGGAAGCGGAAAGGGCCATAGCAGATCGTGAGAAAAGCATACACA
ATCTGCACTCCACTTTGGCTATTGATCGATTTGATGATCATCGAACGGAA
CATATCCATGACCCGCACCCGCCCAAGAGAGCGCGCGTATCCGATGCTTT
GCGCTTAATGCGAATGGTAAATACCCATGGTGGTATGATTGTTGGAGAAG
GGTGGAAGGACAGCAATGAACGACCACTTGAAGACCTGGTCACGGAGGCT
GAAAAACCGTTTGCCCCTCTCGATGTCCGAGAAAATGCTCCAAAGCGTCA
GACCGCTGTCTTGGATTCAAATGTTGCTGTGGCCTTTTCGGATGCCATGA
CACATTGGCGAGCCGATGTTGCCCGCTTTTCTGACCCTATTGCTTTAAGT
GGAGATGTGCTGAGGAAACTGAACGACTCCATGAGACCATGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:23435..24676-

>Gcaud2592.t1 ID=Gcaud2592.t1|Name=Gcaud2592.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1242bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:23435..24676- (Gracilaria caudata M_176_S67 male)
ATGGCCGACTTCGAGATTGAGCGTCGCTGCGCCTTTGAGAAACGCCCGGG
TATCGTGCAGCTGTCCGCCACCAACCTTGTTTGGACGCCGGACTCCGCCG
CCTATGGCCGCGAGCAGCGTGTGCCCTTCACTGCTATATCACAGTTTCAA
GTGTCCAAGGAGGGATCTGCCAAGAAGGCCATGATCCGACTCACGTGTTC
TGATAGACCCAACAAAATCACTCTTGACTTTGGCACTAGTTTCACTGATA
GGGATGCGGTGCGCGACGTGCTGAATAGGCTTCAATCCGCGCCAGCTTTT
GCGCCGCCTGTTGTGCAACAGCCGCCAAAGCGGCCGCTTTCCGACAAGCA
GAAAGCTTGGAGAACTTCCTTGCTACAGAAGAAGGAAGTACGTCAAATGC
ACCAGCGCCTTGTGTTGACCGGCGCCGTCACAGAGGAGACCTTTTGGAAG
GGTATGAAATTTCGATACACTCCGAAAGGCGAGCTCAAGAATCCGAATGA
ACCTCTTGACAATGCTGAAGCTCTCAATGAAACTGGAGTTCCTTCAGACG
CATTCACTGCCACTAAGTCGTGTGACGACCTCAAGTGGGATACTGTTCCA
TCTCCAGCACAACGACATCAACTATTCCTCGCCCATCCGGCAGTGAAACG
AGCTTTCTTACACAAAAAGATCGGTTTTGATGATGAGAAAATGTGGGCGT
TGTTCGCAGCTTCCAGTATGGCCCCTCGCAGTGCCCGCCTCAAGTCTAAA
CGCGACTCTGTTCGAGCAGGTGCGGCCGATGCGTTTTTCGCCCCCTTCCA
GGCTAAGGAAGCGGAAAGGGCCATAGCAGATCGTGAGAAAAGCATACACA
ATCTGCACTCCACTTTGGCTATTGATCGATTTGATGATCATCGAACGGAA
CATATCCATGACCCGCACCCGCCCAAGAGAGCGCGCGTATCCGATGCTTT
GCGCTTAATGCGAATGGTAAATACCCATGGTGGTATGATTGTTGGAGAAG
GGTGGAAGGACAGCAATGAACGACCACTTGAAGACCTGGTCACGGAGGCT
GAAAAACCGTTTGCCCCTCTCGATGTCCGAGAAAATGCTCCAAAGCGTCA
GACCGCTGTCTTGGATTCAAATGTTGCTGTGGCCTTTTCGGATGCCATGA
CACATTGGCGAGCCGATGTTGCCCGCTTTTCTGACCCTATTGCTTTAAGT
GGAGATGTGCTGAGGAAACTGAACGACTCCATGAGACCATGA