Gcaud2571.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2571.t1
Unique NameGcaud2571.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length399
Homology
BLAST of Gcaud2571.t1 vs. uniprot
Match: A0A2V3IGS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS2_9FLOR)

HSP 1 Score: 443 bits (1140), Expect = 4.070e-152
Identity = 240/376 (63.83%), Postives = 297/376 (78.99%), Query Frame = 0
Query:   30 MTLSAPQAPKSGRQTLQQRSVIALRGLSDLGGLTIAHELALRLLIPTSMSASMAADTQLLFGGLVGLWTAALFAERMRFETTSLIRETELLPDRWDASIIYTPSLEENEVDDAVAWLFAFEELDGVAAADLLSALASTGSPTMRLRLAEALCAYPVASNISTSILSVLQQDVNPLVRRAAHSALQTLHTPPL---LPSSSE-LQQ---DPEPIYTRAVLDRIFEQSANPYAMPVETHKTLLSADAADSGWLRELVADRVQHMGKAALSRPDFRQLRASVVRDAQQPEPPVDVEKLHSANISVPLFEGLKWSEIHGLCALAMIPAGYELLSLHVGVDLPLRFVGLGWLLALGGLIAYPQSGSLWRRLKKLIDDGTIS 398
            M ++ P A KS +  L++RSVIALRGLSDLGG+T+ HE++ R+L+PT+ +AS AADTQLL GGL+G+WTAALFAERMRFET SLIRE+E LPDRWD+SII+TPSLE+ EV DAVAWL+AF+ELDG+AAADLL  +A+TGSP MR+RLAEAL AYPV SNI TS+LS LQQD +PLVR AAH+AL+T  +PP    +P+S+E LQQ   + +  + RAVLDR+FEQ   P  +  +    + + + ++  WLRELVA+RV +M  AALS PD  QLRASVV      E  VDV +L+SA ++VPLFEGLKWSEIHGL  LA++PAGYELLS+  GVDLPLRFVGLGWLL +GG+IAYPQSG +WRRLKKLIDD  +S
Sbjct:    1 MVMTPPPA-KSSQANLEKRSVIALRGLSDLGGMTVLHEMSARILLPTTAAASGAADTQLLLGGLIGVWTAALFAERMRFETHSLIRESEQLPDRWDSSIIHTPSLEDTEVADAVAWLYAFDELDGIAAADLLRTVAATGSPKMRIRLAEALTAYPVRSNICTSVLSSLQQDGHPLVREAAHTALKTFQSPPSFSPVPTSTEPLQQAVLEADEQHVRAVLDRLFEQPTYP-TLDDQQLVHIPADEQSNHAWLRELVAERVNYMRDAALSTPDLCQLRASVVGSHDHAEHVVDVSQLNSAKVNVPLFEGLKWSEIHGLATLALLPAGYELLSVLDGVDLPLRFVGLGWLLTVGGMIAYPQSGGIWRRLKKLIDDRVVS 374          
BLAST of Gcaud2571.t1 vs. uniprot
Match: M2WUV1_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WUV1_GALSU)

HSP 1 Score: 78.6 bits (192), Expect = 2.880e-12
Identity = 94/363 (25.90%), Postives = 151/363 (41.60%), Query Frame = 0
Query:   46 QQRSVIALRGLSDLGGLTIAHELALRLLIPTSMSAS--MAADTQLLFGGLVGLWTAALF--------AERMRFETTSLIRETELLPDRWDASIIYTPSL---EENEVDDAVAWLFAFEELDGVAAADLLSALASTGSPTMRLRLAEALCAYPVASNISTSILSVLQQ----DVNPLVRRAAHSALQTLHTPPLLPSSSELQQDPEPIYTRAVLDRIFEQSANPYAMPVETHKTLLSADAADSGWLRELVADRVQHM-GKAALSRPDFRQLRASVVRDAQQPEPPVDVEKLHSANISVPLFEGLKWSEIHGLCALAMIPAGYELLSLHVGVDLPLRFVGLGWLLALGGLIAYPQSGSLWRRLKK 390
            +++S+ A R +SD    TI  E   R L  +   AS  +   ++L  G L+G+++            AE  R +   L   +  L   WD S      L   +  E+++ V W    EEL+G  A      +  + S   R+ LA  L      SNI   +L  LQQ    D N LVR  A ++++ L    ++PS       PE +   ++L+   EQS    ++  E                   +   V H+ GK+ ++  +      S + ++  P                  F+ +   +I   C L+ +  G +   L   VDLP RFV LGW+  +GGLI YP+SG LW+ L++
Sbjct:   79 KKQSLYAFRAVSDSAFSTIIFEFFSRGLRVSCFQASPLLFVGSELFVGSLLGIFSVVANIIGIVERRAEESRKQQQFLENASAQLVADWDFSDSVEADLTSFDTFEIEEMVRWFEVLEELEGPGAMQFFQEVLLSDSVEKRVTLARCLGRCQTRSNI---LLCTLQQLAMKDSNSLVRNVARNSIRELIRHNVIPSPP--LHLPENLSVFSMLNE--EQSLRELSISYEK------------------IPSGVFHVSGKSRITESNSDANLDSFLENSFTP------------------FDRMDVLDIVTFCGLSSVIMGLQFYCLSHSVDLPFRFVALGWVFGVGGLIVYPRSGRLWQYLRR 398          
The following BLAST results are available for this feature:
BLAST of Gcaud2571.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGS2_9FLOR4.070e-15263.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
M2WUV1_GALSU2.880e-1225.90Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..358
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 379..398
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 359..378
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 141..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1064_length_14381_cov_4.633380contigNODE_1064_length_14381_cov_4.633380:5419..6615 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2571.t1Gcaud2571.t1Gracilaria caudata M_176_S67 malemRNANODE_1064_length_14381_cov_4.633380 5419..6615 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=399bp
MTAFVTSATPLRATAPTQALTSRRMRRPRMTLSAPQAPKSGRQTLQQRSV
IALRGLSDLGGLTIAHELALRLLIPTSMSASMAADTQLLFGGLVGLWTAA
LFAERMRFETTSLIRETELLPDRWDASIIYTPSLEENEVDDAVAWLFAFE
ELDGVAAADLLSALASTGSPTMRLRLAEALCAYPVASNISTSILSVLQQD
VNPLVRRAAHSALQTLHTPPLLPSSSELQQDPEPIYTRAVLDRIFEQSAN
PYAMPVETHKTLLSADAADSGWLRELVADRVQHMGKAALSRPDFRQLRAS
VVRDAQQPEPPVDVEKLHSANISVPLFEGLKWSEIHGLCALAMIPAGYEL
LSLHVGVDLPLRFVGLGWLLALGGLIAYPQSGSLWRRLKKLIDDGTIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold