Gcaud2571.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2571.t1
Unique Name	Gcaud2571.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1064_length_14381_cov_4.633380	contig	NODE_1064_length_14381_cov_4.633380:5419..6615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2571	Gcaud2571	Gracilaria caudata M_176_S67 male	gene	NODE_1064_length_14381_cov_4.633380 5419..6615 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2571.t1.start1	Gcaud2571.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1064_length_14381_cov_4.633380 5419..5421 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2571.t1.CDS1	Gcaud2571.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1064_length_14381_cov_4.633380 5419..6615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2571.t1.exon1	Gcaud2571.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1064_length_14381_cov_4.633380 5419..6615 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2571.t1.stop1	Gcaud2571.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1064_length_14381_cov_4.633380 6613..6615 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2571.t1	Gcaud2571.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1064_length_14381_cov_4.633380 5419..6615 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+
coding sequence from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+

mRNA sequence

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=399bp
MTAFVTSATPLRATAPTQALTSRRMRRPRMTLSAPQAPKSGRQTLQQRSV
IALRGLSDLGGLTIAHELALRLLIPTSMSASMAADTQLLFGGLVGLWTAA
LFAERMRFETTSLIRETELLPDRWDASIIYTPSLEENEVDDAVAWLFAFE
ELDGVAAADLLSALASTGSPTMRLRLAEALCAYPVASNISTSILSVLQQD
VNPLVRRAAHSALQTLHTPPLLPSSSELQQDPEPIYTRAVLDRIFEQSAN
PYAMPVETHKTLLSADAADSGWLRELVADRVQHMGKAALSRPDFRQLRAS
VVRDAQQPEPPVDVEKLHSANISVPLFEGLKWSEIHGLCALAMIPAGYEL
LSLHVGVDLPLRFVGLGWLLALGGLIAYPQSGSLWRRLKKLIDDGTIS*

spliced messenger RNA

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGTTCGTCACCTCTGCCACTCCGCTCCGCGCCACCGCTCCGAC
TCAAGCCCTCACCTCGCGTCGCATGCGCAGGCCCCGCATGACCTTGTCTG
CTCCACAGGCGCCCAAATCCGGTCGACAGACTCTGCAACAGCGCTCCGTC
ATTGCCCTGAGAGGTCTGTCTGACCTCGGCGGCTTGACCATTGCGCACGA
ACTCGCCTTGCGTTTACTGATTCCAACCTCGATGTCGGCTTCCATGGCGG
CCGACACACAGCTGCTGTTCGGCGGTCTGGTGGGCCTCTGGACCGCCGCT
CTCTTTGCAGAACGCATGCGCTTTGAGACAACCTCCCTCATTCGGGAAAC
CGAGCTGCTCCCAGATAGATGGGATGCTTCCATTATCTACACACCCTCTC
TTGAGGAGAACGAAGTCGATGATGCTGTCGCATGGCTGTTCGCGTTTGAG
GAGCTTGATGGTGTAGCCGCAGCTGATTTGCTCTCGGCTTTGGCTTCCAC
TGGTTCTCCTACCATGCGACTTCGCCTCGCAGAGGCGCTCTGCGCCTATC
CGGTAGCGTCAAACATTTCGACATCCATCCTAAGTGTCCTTCAACAAGAC
GTCAACCCTCTTGTTCGACGCGCCGCTCATTCTGCCTTACAGACACTTCA
CACTCCTCCACTGCTTCCGTCTTCCTCAGAGCTACAACAAGATCCCGAGC
CCATTTACACCCGAGCAGTTTTGGACCGAATCTTCGAGCAATCCGCGAAC
CCCTACGCAATGCCGGTCGAAACCCATAAAACCCTGCTGTCTGCTGACGC
GGCCGATTCCGGATGGCTTCGAGAGCTCGTGGCCGACAGAGTACAGCATA
TGGGAAAAGCTGCACTCTCAAGGCCTGATTTCCGTCAGCTGCGCGCATCG
GTCGTTCGAGATGCCCAACAGCCAGAACCCCCAGTCGACGTGGAAAAACT
TCACTCGGCAAACATCAGTGTGCCTTTGTTTGAAGGCTTGAAATGGTCAG
AGATTCATGGCCTTTGTGCCCTTGCCATGATTCCCGCAGGCTATGAGTTG
CTTTCTCTACATGTCGGTGTTGATCTTCCGCTACGTTTTGTTGGGCTTGG
ATGGCTCCTTGCCCTTGGAGGTTTGATAGCTTATCCTCAAAGTGGCAGCC
TGTGGAGAAGACTCAAGAAGCTCATTGATGACGGAACAATATCATAA

protein sequence of Gcaud2571.t1

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=399bp
MTAFVTSATPLRATAPTQALTSRRMRRPRMTLSAPQAPKSGRQTLQQRSV
IALRGLSDLGGLTIAHELALRLLIPTSMSASMAADTQLLFGGLVGLWTAA
LFAERMRFETTSLIRETELLPDRWDASIIYTPSLEENEVDDAVAWLFAFE
ELDGVAAADLLSALASTGSPTMRLRLAEALCAYPVASNISTSILSVLQQD
VNPLVRRAAHSALQTLHTPPLLPSSSELQQDPEPIYTRAVLDRIFEQSAN
PYAMPVETHKTLLSADAADSGWLRELVADRVQHMGKAALSRPDFRQLRAS
VVRDAQQPEPPVDVEKLHSANISVPLFEGLKWSEIHGLCALAMIPAGYEL
LSLHVGVDLPLRFVGLGWLLALGGLIAYPQSGSLWRRLKKLIDDGTIS*

mRNA from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGTTCGTCACCTCTGCCACTCCGCTCCGCGCCACCGCTCCGAC
TCAAGCCCTCACCTCGCGTCGCATGCGCAGGCCCCGCATGACCTTGTCTG
CTCCACAGGCGCCCAAATCCGGTCGACAGACTCTGCAACAGCGCTCCGTC
ATTGCCCTGAGAGGTCTGTCTGACCTCGGCGGCTTGACCATTGCGCACGA
ACTCGCCTTGCGTTTACTGATTCCAACCTCGATGTCGGCTTCCATGGCGG
CCGACACACAGCTGCTGTTCGGCGGTCTGGTGGGCCTCTGGACCGCCGCT
CTCTTTGCAGAACGCATGCGCTTTGAGACAACCTCCCTCATTCGGGAAAC
CGAGCTGCTCCCAGATAGATGGGATGCTTCCATTATCTACACACCCTCTC
TTGAGGAGAACGAAGTCGATGATGCTGTCGCATGGCTGTTCGCGTTTGAG
GAGCTTGATGGTGTAGCCGCAGCTGATTTGCTCTCGGCTTTGGCTTCCAC
TGGTTCTCCTACCATGCGACTTCGCCTCGCAGAGGCGCTCTGCGCCTATC
CGGTAGCGTCAAACATTTCGACATCCATCCTAAGTGTCCTTCAACAAGAC
GTCAACCCTCTTGTTCGACGCGCCGCTCATTCTGCCTTACAGACACTTCA
CACTCCTCCACTGCTTCCGTCTTCCTCAGAGCTACAACAAGATCCCGAGC
CCATTTACACCCGAGCAGTTTTGGACCGAATCTTCGAGCAATCCGCGAAC
CCCTACGCAATGCCGGTCGAAACCCATAAAACCCTGCTGTCTGCTGACGC
GGCCGATTCCGGATGGCTTCGAGAGCTCGTGGCCGACAGAGTACAGCATA
TGGGAAAAGCTGCACTCTCAAGGCCTGATTTCCGTCAGCTGCGCGCATCG
GTCGTTCGAGATGCCCAACAGCCAGAACCCCCAGTCGACGTGGAAAAACT
TCACTCGGCAAACATCAGTGTGCCTTTGTTTGAAGGCTTGAAATGGTCAG
AGATTCATGGCCTTTGTGCCCTTGCCATGATTCCCGCAGGCTATGAGTTG
CTTTCTCTACATGTCGGTGTTGATCTTCCGCTACGTTTTGTTGGGCTTGG
ATGGCTCCTTGCCCTTGGAGGTTTGATAGCTTATCCTCAAAGTGGCAGCC
TGTGGAGAAGACTCAAGAAGCTCATTGATGACGGAACAATATCATAA

Coding sequence (CDS) from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+

>Gcaud2571.t1 ID=Gcaud2571.t1|Name=Gcaud2571.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1197bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:5419..6615+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGTTCGTCACCTCTGCCACTCCGCTCCGCGCCACCGCTCCGAC
TCAAGCCCTCACCTCGCGTCGCATGCGCAGGCCCCGCATGACCTTGTCTG
CTCCACAGGCGCCCAAATCCGGTCGACAGACTCTGCAACAGCGCTCCGTC
ATTGCCCTGAGAGGTCTGTCTGACCTCGGCGGCTTGACCATTGCGCACGA
ACTCGCCTTGCGTTTACTGATTCCAACCTCGATGTCGGCTTCCATGGCGG
CCGACACACAGCTGCTGTTCGGCGGTCTGGTGGGCCTCTGGACCGCCGCT
CTCTTTGCAGAACGCATGCGCTTTGAGACAACCTCCCTCATTCGGGAAAC
CGAGCTGCTCCCAGATAGATGGGATGCTTCCATTATCTACACACCCTCTC
TTGAGGAGAACGAAGTCGATGATGCTGTCGCATGGCTGTTCGCGTTTGAG
GAGCTTGATGGTGTAGCCGCAGCTGATTTGCTCTCGGCTTTGGCTTCCAC
TGGTTCTCCTACCATGCGACTTCGCCTCGCAGAGGCGCTCTGCGCCTATC
CGGTAGCGTCAAACATTTCGACATCCATCCTAAGTGTCCTTCAACAAGAC
GTCAACCCTCTTGTTCGACGCGCCGCTCATTCTGCCTTACAGACACTTCA
CACTCCTCCACTGCTTCCGTCTTCCTCAGAGCTACAACAAGATCCCGAGC
CCATTTACACCCGAGCAGTTTTGGACCGAATCTTCGAGCAATCCGCGAAC
CCCTACGCAATGCCGGTCGAAACCCATAAAACCCTGCTGTCTGCTGACGC
GGCCGATTCCGGATGGCTTCGAGAGCTCGTGGCCGACAGAGTACAGCATA
TGGGAAAAGCTGCACTCTCAAGGCCTGATTTCCGTCAGCTGCGCGCATCG
GTCGTTCGAGATGCCCAACAGCCAGAACCCCCAGTCGACGTGGAAAAACT
TCACTCGGCAAACATCAGTGTGCCTTTGTTTGAAGGCTTGAAATGGTCAG
AGATTCATGGCCTTTGTGCCCTTGCCATGATTCCCGCAGGCTATGAGTTG
CTTTCTCTACATGTCGGTGTTGATCTTCCGCTACGTTTTGTTGGGCTTGG
ATGGCTCCTTGCCCTTGGAGGTTTGATAGCTTATCCTCAAAGTGGCAGCC
TGTGGAGAAGACTCAAGAAGCTCATTGATGACGGAACAATATCATAA