Gcaud2554.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2554.t1
Unique NameGcaud2554.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Homology
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BLAST of Gcaud2554.t1 vs. uniprot
Match: A0A2V3ILY0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY0_9FLOR)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-9
Identity = 72/244 (29.51%), Postives = 105/244 (43.03%), Query Frame = 0 
Query:    5 SEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDNFLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHN--------LREKGHANANAQGSRLKSSEEEANPSVMVSGAEH--SRKRKAAMP------LSQAPPPH------------VRLSKRSKQNVHREQAP---YLPTKTQSAHADVTPADGDQKIMIPXXXXXVLQGQPLSEELEQLLKSWYEAGYRAGLYVGKQS 217
            SEP    EQ++EQ+ E      DG+     +S  E  + DG +D NF+ IEYD DAWDDT L+ AYERA+        +K N             H + +      +  +    P     G     + +  + +P      L +  P H            +R +KR + ++   + P    +P +  S  +    +D     MIP     +L  Q LS ELE+LL SWY AGYRAGL    Q+
Sbjct:  109 SEPSPEQEQHEEQVLES-----DGI----GSSQPEENESDGTDDGNFVPIEYDVDAWDDTELVAAYERAMEMGGNTNRAKKNRXXXXXXXXXXXXHEHQSLDNDVHRGLQPFTTPLAREQGGTECGAERTLSCVPVPSEIMLPKLVPTHDWMTAIPEDVEPIRAAKRVRFSMDYGETPASEVVPMREPSTASPTHVSDS----MIPPPPPAILARQRLSPELEELLNSWYIAGYRAGLAASTQT 339
The following BLAST results are available for this feature:
BLAST of Gcaud2554.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILY0_9FLOR1.610e-929.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010304Survival motor neuronPFAMPF06003SMNcoord: 112..218
e-value: 4.5E-5
score: 22.9
coord: 57..81
e-value: 6.7E-5
score: 22.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1552_length_9789_cov_4.214168contigNODE_1552_length_9789_cov_4.214168:6476..7215 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2554.t1Gcaud2554.t1Gracilaria caudata M_176_S67 malemRNANODE_1552_length_9789_cov_4.214168 6476..7215 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MSGDSEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDN
FLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHNLREKGHANANAQGS
RLKSSEEEANPSVMVSGAEHSRKRKAAMPLSQAPPPHVRLSKRSKQNVHR
EQAPYLPTKTQSAHADVTPADGDQKIMIPPPPPPVLQGQPLSEELEQLLK
SWYEAGYRAGLYVGKQSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010304Survival_motor_neuron