Gcaud2554.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2554.t1
Unique Name	Gcaud2554.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1552_length_9789_cov_4.214168	contig	NODE_1552_length_9789_cov_4.214168:6476..7215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2554	Gcaud2554	Gracilaria caudata M_176_S67 male	gene	NODE_1552_length_9789_cov_4.214168 6476..7215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1	Gcaud2554.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1552_length_9789_cov_4.214168 6476..7215 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1.start1	Gcaud2554.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1552_length_9789_cov_4.214168 6476..6478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1.CDS1	Gcaud2554.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 6476..6617 +
Gcaud2554.t1.CDS2	Gcaud2554.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 6701..7215 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1.exon1	Gcaud2554.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 6476..6617 +
Gcaud2554.t1.exon2	Gcaud2554.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 6701..7215 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1.intron1	Gcaud2554.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 6618..6700 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1.stop1	Gcaud2554.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1552_length_9789_cov_4.214168 7213..7215 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+
coding sequence from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+

mRNA sequence

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MSGDSEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDN
FLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHNLREKGHANANAQGS
RLKSSEEEANPSVMVSGAEHSRKRKAAMPLSQAPPPHVRLSKRSKQNVHR
EQAPYLPTKTQSAHADVTPADGDQKIMIPPPPPPVLQGQPLSEELEQLLK
SWYEAGYRAGLYVGKQSR*

spliced messenger RNA

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGAGACTCAGAACCAGAAGCGCCTGCAGAACAAAACCAAGAACA
AATTCCAGAGCAGTCGCCGCAACAAGACGACGGTCTTGAAGGTTTGGACA
ATGCATCTCATTCCGAAACTGGCGATGGAGATGGAATTGAAGATGACAAT
TTCCTCGCTATAGAATACGATGAGGATGCCTGGGATGACACGGCGCTCAT
AGAAGCATACGAACGCGCTGTCACGTCATACCGTATTGACAAAGGTTCCA
AACATAATCTCCGCGAAAAAGGACACGCAAATGCAAATGCACAAGGCAGT
CGACTAAAGTCGAGCGAAGAAGAAGCAAATCCGAGCGTGATGGTGTCTGG
TGCAGAGCACTCACGGAAACGAAAAGCGGCTATGCCACTTTCTCAAGCCC
CACCACCTCATGTCAGACTATCAAAGCGCTCAAAACAGAACGTTCATCGC
GAACAAGCACCATATCTACCAACCAAAACACAGAGCGCGCACGCAGATGT
TACCCCAGCTGATGGTGACCAAAAAATTATGATTCCCCCGCCACCACCTC
CTGTCTTACAAGGTCAACCGCTTTCTGAGGAGCTTGAGCAGTTGCTCAAG
TCATGGTACGAAGCTGGATACAGAGCGGGGCTATACGTTGGAAAGCAAAG
TCGATAG

protein sequence of Gcaud2554.t1

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MSGDSEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDN
FLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHNLREKGHANANAQGS
RLKSSEEEANPSVMVSGAEHSRKRKAAMPLSQAPPPHVRLSKRSKQNVHR
EQAPYLPTKTQSAHADVTPADGDQKIMIPPPPPPVLQGQPLSEELEQLLK
SWYEAGYRAGLYVGKQSR*

mRNA from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=740bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGAGACTCAGAACCAGAAGCGCCTGCAGAACAAAACCAAGAACA
AATTCCAGAGCAGTCGCCGCAACAAGACGACGGTCTTGAAGGTTTGGACA
ATGCATCTCATTCCGAAACTGGCGATGGAGATGGAATTGAAGGTAAGAAT
ATCGCTTTTCTCCTCTTCTTTGAAACAGTGAGCTGATTTAAGCCCATTTG
CACTCCTCTTGGAATCAACATATAGATGACAATTTCCTCGCTATAGAATA
CGATGAGGATGCCTGGGATGACACGGCGCTCATAGAAGCATACGAACGCG
CTGTCACGTCATACCGTATTGACAAAGGTTCCAAACATAATCTCCGCGAA
AAAGGACACGCAAATGCAAATGCACAAGGCAGTCGACTAAAGTCGAGCGA
AGAAGAAGCAAATCCGAGCGTGATGGTGTCTGGTGCAGAGCACTCACGGA
AACGAAAAGCGGCTATGCCACTTTCTCAAGCCCCACCACCTCATGTCAGA
CTATCAAAGCGCTCAAAACAGAACGTTCATCGCGAACAAGCACCATATCT
ACCAACCAAAACACAGAGCGCGCACGCAGATGTTACCCCAGCTGATGGTG
ACCAAAAAATTATGATTCCCCCGCCACCACCTCCTGTCTTACAAGGTCAA
CCGCTTTCTGAGGAGCTTGAGCAGTTGCTCAAGTCATGGTACGAAGCTGG
ATACAGAGCGGGGCTATACGTTGGAAAGCAAAGTCGATAG

Coding sequence (CDS) from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:6476..7215+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGAGACTCAGAACCAGAAGCGCCTGCAGAACAAAACCAAGAACA
AATTCCAGAGCAGTCGCCGCAACAAGACGACGGTCTTGAAGGTTTGGACA
ATGCATCTCATTCCGAAACTGGCGATGGAGATGGAATTGAAGATGACAAT
TTCCTCGCTATAGAATACGATGAGGATGCCTGGGATGACACGGCGCTCAT
AGAAGCATACGAACGCGCTGTCACGTCATACCGTATTGACAAAGGTTCCA
AACATAATCTCCGCGAAAAAGGACACGCAAATGCAAATGCACAAGGCAGT
CGACTAAAGTCGAGCGAAGAAGAAGCAAATCCGAGCGTGATGGTGTCTGG
TGCAGAGCACTCACGGAAACGAAAAGCGGCTATGCCACTTTCTCAAGCCC
CACCACCTCATGTCAGACTATCAAAGCGCTCAAAACAGAACGTTCATCGC
GAACAAGCACCATATCTACCAACCAAAACACAGAGCGCGCACGCAGATGT
TACCCCAGCTGATGGTGACCAAAAAATTATGATTCCCCCGCCACCACCTC
CTGTCTTACAAGGTCAACCGCTTTCTGAGGAGCTTGAGCAGTTGCTCAAG
TCATGGTACGAAGCTGGATACAGAGCGGGGCTATACGTTGGAAAGCAAAG
TCGATAG