Gcaud2554.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2554.t1
Unique Name	Gcaud2554.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	219

Homology

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BLAST of Gcaud2554.t1 vs. uniprot
Match: A0A2V3ILY0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY0_9FLOR)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-9
Identity = 72/244 (29.51%), Postives = 105/244 (43.03%), Query Frame = 0

Query:    5 SEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDNFLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHN--------LREKGHANANAQGSRLKSSEEEANPSVMVSGAEH--SRKRKAAMP------LSQAPPPH------------VRLSKRSKQNVHREQAP---YLPTKTQSAHADVTPADGDQKIMIPXXXXXVLQGQPLSEELEQLLKSWYEAGYRAGLYVGKQS 217
            SEP    EQ++EQ+ E      DG+     +S  E  + DG +D NF+ IEYD DAWDDT L+ AYERA+        +K N             H + +      +  +    P     G     + +  + +P      L +  P H            +R +KR + ++   + P    +P +  S  +    +D     MIP     +L  Q LS ELE+LL SWY AGYRAGL    Q+
Sbjct:  109 SEPSPEQEQHEEQVLES-----DGI----GSSQPEENESDGTDDGNFVPIEYDVDAWDDTELVAAYERAMEMGGNTNRAKKNRXXXXXXXXXXXXHEHQSLDNDVHRGLQPFTTPLAREQGGTECGAERTLSCVPVPSEIMLPKLVPTHDWMTAIPEDVEPIRAAKRVRFSMDYGETPASEVVPMREPSTASPTHVSDS----MIPPPPPAILARQRLSPELEELLNSWYIAGYRAGLAASTQT 339

The following BLAST results are available for this feature:

BLAST of Gcaud2554.t1 vs. uniprot

BLAST of Gcaud2554.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3ILY0_9FLOR	1.610e-9	29.51	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010304	Survival motor neuron	PFAM	PF06003	SMN	coord: 112..218 e-value: 4.5E-5 score: 22.9 coord: 57..81 e-value: 6.7E-5 score: 22.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..190

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1552_length_9789_cov_4.214168	contig	NODE_1552_length_9789_cov_4.214168:6476..7215 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2554.t1	Gcaud2554.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1552_length_9789_cov_4.214168 6476..7215 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2554.t1 ID=Gcaud2554.t1|Name=Gcaud2554.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MSGDSEPEAPAEQNQEQIPEQSPQQDDGLEGLDNASHSETGDGDGIEDDN
FLAIEYDEDAWDDTALIEAYERAVTSYRIDKGSKHNLREKGHANANAQGS
RLKSSEEEANPSVMVSGAEHSRKRKAAMPLSQAPPPHVRLSKRSKQNVHR
EQAPYLPTKTQSAHADVTPADGDQKIMIPPPPPPVLQGQPLSEELEQLLK
SWYEAGYRAGLYVGKQSR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010304	Survival_motor_neuron