Gcaud2544.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2544.t1
Unique Name	Gcaud2544.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Homology

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BLAST of Gcaud2544.t1 vs. uniprot
Match: A0A2V3J2H8_9FLOR (PWWP domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2H8_9FLOR)

HSP 1 Score: 180 bits (456), Expect = 6.570e-47
Identity = 141/394 (35.79%), Postives = 207/394 (52.54%), Query Frame = 0

Query:    1 MDEKYPYGAFVWAKIPSFPWWPAKVIKPERRHLNLFQLSKLKRGQYVVAFFNDNGQFGVCADYDLQPFQNRSLHELAQTEKGPLRRRLLKAIEIAEDDLQALGHRVQDE-HLPTKTNEEHDADPQHTSVTKRSCGSKSENVAKAKKKKSADSPIKVRK----GKTTLGK-RKSSNRKEVYSDSMQYFIVPDDEEVSVEPSNAEREYEIVFYGDDSANRCRKKTRYEEQLGGETGAENHHYSRRMSFRERPNSNIIKSEGKLCKPRAES--TESITLSQHRDVQD------KNHSKKQNAPKEASESIRALSSPRPPSLSEVANKSMMRDTEKAVDLSKRSRFKVLMEHLGAILESNVKQWEERLKNAKESSIIREEVLLLKTTVPALVGGQRLV 380
            +   +P G+ VWAKI S+PWWPA VI+P   H    Q+ KL   + +V F+NDN Q  +    +L PF N ++ +   T KG L+ RL KA+E+A+ +  A G  V +    P K ++ H  +      TKRS  +KSE      KK+   SP    K      T  GK RKSS R++  S  ++  IV   EE   + S  +   E+    D  A + R+  ++E++L G+ G++     RR S    P+     S     + R+ S  TES   SQ  D+++      K+   +Q+  +++  +   + S RPPSLSE A KSM RDTE    +    R KVLM+HL AI +SN KQW + +KNAKE+ IIR+EV LL+  +P +  G+ LV
Sbjct:    4 VHASFPPGSIVWAKISSYPWWPASVIEPLPHHYRQLQIPKLTHAERIVVFYNDNEQIALVTIDNLLPFSNHAVRKKIVTVKGGLKARLKKAVELAQVEYDAAGEGVPEPAEPPAKASKTHAHESPRAHTTKRSYAAKSE------KKRRVSSPRHQNKEDEYDDTLPGKKRKSSYRRK--SGPVEDMIVEQVEEDEPDVSGPDSSTELAIASDQGA-QSRRPVKHEKRLHGDRGSK----KRRRSRFSTPSHTHRDSHVANVEKRSHSARTESPLPSQRVDMEEPGVASLKHSRDEQDVSRKSVGNSHPVPSSRPPSLSEEAYKSMARDTEHFESMPNEERLKVLMKHLRAIRKSNAKQWRQGVKNAKEADIIRDEVELLRVVLPIVKKGRDLV 384

The following BLAST results are available for this feature:

BLAST of Gcaud2544.t1 vs. uniprot

BLAST of Gcaud2544.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J2H8_9FLOR	6.570e-47	35.79	PWWP domain-containing protein n=1 Tax=Gracilariop...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 336..356
None	No IPR available	GENE3D	2.30.30.140		coord: 1..105 e-value: 2.9E-18 score: 68.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..240
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 3..108
IPR000313	PWWP domain	SMART	SM00293	PWWP_4	coord: 5..69 e-value: 1.2E-7 score: 41.4
IPR000313	PWWP domain	PFAM	PF00855	PWWP	coord: 8..99 e-value: 1.6E-13 score: 51.0
IPR000313	PWWP domain	PROSITE	PS50812	PWWP	coord: 7..63 score: 12.721613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:24977..26170 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1	Gcaud2544.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_146_length_43567_cov_5.009154 24977..26170 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MDEKYPYGAFVWAKIPSFPWWPAKVIKPERRHLNLFQLSKLKRGQYVVAF
FNDNGQFGVCADYDLQPFQNRSLHELAQTEKGPLRRRLLKAIEIAEDDLQ
ALGHRVQDEHLPTKTNEEHDADPQHTSVTKRSCGSKSENVAKAKKKKSAD
SPIKVRKGKTTLGKRKSSNRKEVYSDSMQYFIVPDDEEVSVEPSNAEREY
EIVFYGDDSANRCRKKTRYEEQLGGETGAENHHYSRRMSFRERPNSNIIK
SEGKLCKPRAESTESITLSQHRDVQDKNHSKKQNAPKEASESIRALSSPR
PPSLSEVANKSMMRDTEKAVDLSKRSRFKVLMEHLGAILESNVKQWEERL
KNAKESSIIREEVLLLKTTVPALVGGQRLVLEIKIDAEVRPEASYLS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000313	PWWP_dom