Gcaud2544.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2544.t1
Unique Name	Gcaud2544.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:24977..26170 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005649439.1
PFAMs	PWWP
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K06236
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Evalue	9.31e-08
EggNOG OGs	29I7S@1\|root,2RREV@2759\|Eukaryota,3847Q@33090\|Viridiplantae,34NUW@3041\|Chlorophyta
Description	PWWP domain
COG category	S
BRITE	ko00000,ko00001,ko00536,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2544	Gcaud2544	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 24977..26170 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1.start1	Gcaud2544.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 24977..24979 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1.CDS1	Gcaud2544.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 24977..26170 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1.exon1	Gcaud2544.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 24977..26170 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1.stop1	Gcaud2544.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 26168..26170 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2544.t1	Gcaud2544.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 24977..26170 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+

mRNA sequence

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MDEKYPYGAFVWAKIPSFPWWPAKVIKPERRHLNLFQLSKLKRGQYVVAF
FNDNGQFGVCADYDLQPFQNRSLHELAQTEKGPLRRRLLKAIEIAEDDLQ
ALGHRVQDEHLPTKTNEEHDADPQHTSVTKRSCGSKSENVAKAKKKKSAD
SPIKVRKGKTTLGKRKSSNRKEVYSDSMQYFIVPDDEEVSVEPSNAEREY
EIVFYGDDSANRCRKKTRYEEQLGGETGAENHHYSRRMSFRERPNSNIIK
SEGKLCKPRAESTESITLSQHRDVQDKNHSKKQNAPKEASESIRALSSPR
PPSLSEVANKSMMRDTEKAVDLSKRSRFKVLMEHLGAILESNVKQWEERL
KNAKESSIIREEVLLLKTTVPALVGGQRLVLEIKIDAEVRPEASYLS*

spliced messenger RNA

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGAAGTATCCCTACGGTGCATTTGTATGGGCCAAAATTCCAAG
CTTCCCATGGTGGCCGGCAAAAGTCATCAAACCAGAGAGAAGGCATTTGA
ACTTGTTTCAACTTAGCAAGCTCAAAAGGGGTCAATATGTGGTCGCGTTT
TTCAACGACAATGGGCAATTTGGTGTTTGTGCGGATTACGACCTCCAGCC
ATTCCAGAACAGGTCTCTACACGAACTGGCTCAAACAGAGAAAGGGCCAC
TAAGGAGAAGACTGTTGAAGGCCATTGAAATTGCGGAAGATGATCTACAG
GCTCTCGGTCACAGAGTACAGGACGAACATTTACCAACCAAGACCAATGA
GGAGCATGACGCAGACCCTCAGCACACTTCGGTCACGAAGCGCTCTTGTG
GTTCGAAGAGTGAAAACGTGGCGAAGGCAAAGAAGAAGAAGAGCGCCGAT
TCTCCCATCAAGGTGCGCAAGGGCAAAACTACTCTTGGAAAGCGCAAGTC
TTCAAATCGAAAGGAAGTCTACTCCGATTCAATGCAATACTTTATTGTGC
CAGATGATGAAGAAGTTAGCGTCGAACCCTCTAACGCTGAAAGGGAATAT
GAAATTGTGTTTTACGGCGACGACAGTGCCAACCGGTGCCGTAAAAAGAC
AAGGTACGAAGAACAGCTTGGGGGGGAGACCGGCGCTGAAAATCACCATT
ACTCCAGGAGAATGAGTTTCCGAGAACGTCCCAATTCGAATATTATCAAG
TCTGAGGGAAAGCTTTGTAAACCGCGGGCTGAGAGCACTGAGAGTATTAC
ACTTTCTCAACACAGAGATGTACAGGACAAGAACCATTCGAAGAAGCAAA
ACGCACCGAAAGAAGCATCCGAATCAATTCGAGCTCTTTCTTCTCCTCGT
CCTCCGTCTTTATCAGAAGTGGCCAACAAGAGCATGATGCGCGATACAGA
AAAAGCAGTGGACCTTTCGAAGCGATCTCGTTTCAAAGTGCTCATGGAGC
ACCTCGGGGCAATCCTTGAAAGCAACGTGAAGCAGTGGGAGGAAAGACTG
AAGAACGCTAAGGAGTCTTCGATAATCCGCGAGGAGGTACTTCTCCTGAA
AACCACTGTCCCTGCCCTGGTCGGCGGTCAACGCCTTGTTCTAGAAATAA
AGATTGATGCAGAGGTGCGGCCTGAGGCAAGCTATCTGAGCTGA

protein sequence of Gcaud2544.t1

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MDEKYPYGAFVWAKIPSFPWWPAKVIKPERRHLNLFQLSKLKRGQYVVAF
FNDNGQFGVCADYDLQPFQNRSLHELAQTEKGPLRRRLLKAIEIAEDDLQ
ALGHRVQDEHLPTKTNEEHDADPQHTSVTKRSCGSKSENVAKAKKKKSAD
SPIKVRKGKTTLGKRKSSNRKEVYSDSMQYFIVPDDEEVSVEPSNAEREY
EIVFYGDDSANRCRKKTRYEEQLGGETGAENHHYSRRMSFRERPNSNIIK
SEGKLCKPRAESTESITLSQHRDVQDKNHSKKQNAPKEASESIRALSSPR
PPSLSEVANKSMMRDTEKAVDLSKRSRFKVLMEHLGAILESNVKQWEERL
KNAKESSIIREEVLLLKTTVPALVGGQRLVLEIKIDAEVRPEASYLS*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+ (Gracilaria caudata M_176_S67 male)
ATGGATGAGAAGTATCCCTACGGTGCATTTGTATGGGCCAAAATTCCAAG
CTTCCCATGGTGGCCGGCAAAAGTCATCAAACCAGAGAGAAGGCATTTGA
ACTTGTTTCAACTTAGCAAGCTCAAAAGGGGTCAATATGTGGTCGCGTTT
TTCAACGACAATGGGCAATTTGGTGTTTGTGCGGATTACGACCTCCAGCC
ATTCCAGAACAGGTCTCTACACGAACTGGCTCAAACAGAGAAAGGGCCAC
TAAGGAGAAGACTGTTGAAGGCCATTGAAATTGCGGAAGATGATCTACAG
GCTCTCGGTCACAGAGTACAGGACGAACATTTACCAACCAAGACCAATGA
GGAGCATGACGCAGACCCTCAGCACACTTCGGTCACGAAGCGCTCTTGTG
GTTCGAAGAGTGAAAACGTGGCGAAGGCAAAGAAGAAGAAGAGCGCCGAT
TCTCCCATCAAGGTGCGCAAGGGCAAAACTACTCTTGGAAAGCGCAAGTC
TTCAAATCGAAAGGAAGTCTACTCCGATTCAATGCAATACTTTATTGTGC
CAGATGATGAAGAAGTTAGCGTCGAACCCTCTAACGCTGAAAGGGAATAT
GAAATTGTGTTTTACGGCGACGACAGTGCCAACCGGTGCCGTAAAAAGAC
AAGGTACGAAGAACAGCTTGGGGGGGAGACCGGCGCTGAAAATCACCATT
ACTCCAGGAGAATGAGTTTCCGAGAACGTCCCAATTCGAATATTATCAAG
TCTGAGGGAAAGCTTTGTAAACCGCGGGCTGAGAGCACTGAGAGTATTAC
ACTTTCTCAACACAGAGATGTACAGGACAAGAACCATTCGAAGAAGCAAA
ACGCACCGAAAGAAGCATCCGAATCAATTCGAGCTCTTTCTTCTCCTCGT
CCTCCGTCTTTATCAGAAGTGGCCAACAAGAGCATGATGCGCGATACAGA
AAAAGCAGTGGACCTTTCGAAGCGATCTCGTTTCAAAGTGCTCATGGAGC
ACCTCGGGGCAATCCTTGAAAGCAACGTGAAGCAGTGGGAGGAAAGACTG
AAGAACGCTAAGGAGTCTTCGATAATCCGCGAGGAGGTACTTCTCCTGAA
AACCACTGTCCCTGCCCTGGTCGGCGGTCAACGCCTTGTTCTAGAAATAA
AGATTGATGCAGAGGTGCGGCCTGAGGCAAGCTATCTGAGCTGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+

>Gcaud2544.t1 ID=Gcaud2544.t1|Name=Gcaud2544.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:24977..26170+ (Gracilaria caudata M_176_S67 male)
ATGGATGAGAAGTATCCCTACGGTGCATTTGTATGGGCCAAAATTCCAAG
CTTCCCATGGTGGCCGGCAAAAGTCATCAAACCAGAGAGAAGGCATTTGA
ACTTGTTTCAACTTAGCAAGCTCAAAAGGGGTCAATATGTGGTCGCGTTT
TTCAACGACAATGGGCAATTTGGTGTTTGTGCGGATTACGACCTCCAGCC
ATTCCAGAACAGGTCTCTACACGAACTGGCTCAAACAGAGAAAGGGCCAC
TAAGGAGAAGACTGTTGAAGGCCATTGAAATTGCGGAAGATGATCTACAG
GCTCTCGGTCACAGAGTACAGGACGAACATTTACCAACCAAGACCAATGA
GGAGCATGACGCAGACCCTCAGCACACTTCGGTCACGAAGCGCTCTTGTG
GTTCGAAGAGTGAAAACGTGGCGAAGGCAAAGAAGAAGAAGAGCGCCGAT
TCTCCCATCAAGGTGCGCAAGGGCAAAACTACTCTTGGAAAGCGCAAGTC
TTCAAATCGAAAGGAAGTCTACTCCGATTCAATGCAATACTTTATTGTGC
CAGATGATGAAGAAGTTAGCGTCGAACCCTCTAACGCTGAAAGGGAATAT
GAAATTGTGTTTTACGGCGACGACAGTGCCAACCGGTGCCGTAAAAAGAC
AAGGTACGAAGAACAGCTTGGGGGGGAGACCGGCGCTGAAAATCACCATT
ACTCCAGGAGAATGAGTTTCCGAGAACGTCCCAATTCGAATATTATCAAG
TCTGAGGGAAAGCTTTGTAAACCGCGGGCTGAGAGCACTGAGAGTATTAC
ACTTTCTCAACACAGAGATGTACAGGACAAGAACCATTCGAAGAAGCAAA
ACGCACCGAAAGAAGCATCCGAATCAATTCGAGCTCTTTCTTCTCCTCGT
CCTCCGTCTTTATCAGAAGTGGCCAACAAGAGCATGATGCGCGATACAGA
AAAAGCAGTGGACCTTTCGAAGCGATCTCGTTTCAAAGTGCTCATGGAGC
ACCTCGGGGCAATCCTTGAAAGCAACGTGAAGCAGTGGGAGGAAAGACTG
AAGAACGCTAAGGAGTCTTCGATAATCCGCGAGGAGGTACTTCTCCTGAA
AACCACTGTCCCTGCCCTGGTCGGCGGTCAACGCCTTGTTCTAGAAATAA
AGATTGATGCAGAGGTGCGGCCTGAGGCAAGCTATCTGAGCTGA