Gcaud2543.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2543.t1
Unique NameGcaud2543.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length286
Homology
BLAST of Gcaud2543.t1 vs. uniprot
Match: A0A2V3J6U3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U3_9FLOR)

HSP 1 Score: 422 bits (1085), Expect = 5.230e-147
Identity = 204/275 (74.18%), Postives = 230/275 (83.64%), Query Frame = 0
Query:   10 YYNTRLILAIAASTLFPLTLLVSRASPTRVNACYIRRELESPPPPLIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFHVTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLRLKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGPAISFNHLIFHLCLWTILLICTYFVVSEQTKSPKE 284
            Y  TR  LA+AA TL PLT+ + RASP R+NACYIRREL+SPPPPLIPLRD  LHNYSVYIMWTAMFLLALLPHAR  ALFSLTYASLWFH TYIYLAAFKAPL DFNCAGRH  YPNGISGHYCYFIFVAFTA+RYAR RLK NP+ASP +KA  A L++LFG+GG ATLYRTFFHGYHSARQIS+G+SLGI +HC LD +LFQ+ SGF T  RL  LLANS TSL+LY+RLWPH +AGPAISF +L+FH  LW ILL+CTY++ + +    KE
Sbjct:    9 YNTTRNFLALAAVTLLPLTIFLERASPARLNACYIRRELQSPPPPLIPLRDSVLHNYSVYIMWTAMFLLALLPHARPKALFSLTYASLWFHATYIYLAAFKAPLQDFNCAGRHKSYPNGISGHYCYFIFVAFTAARYARSRLKSNPNASPGIKAAAAALMSLFGVGGVATLYRTFFHGYHSARQISYGASLGIFAHCVLDYILFQEDSGFTTYLRLLFLLANSTTSLTLYFRLWPHEAAGPAISFGNLVFHASLWVILLVCTYYLRAAEENPAKE 283          
BLAST of Gcaud2543.t1 vs. uniprot
Match: R7QBL7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBL7_CHOCR)

HSP 1 Score: 300 bits (769), Expect = 5.410e-99
Identity = 155/269 (57.62%), Postives = 186/269 (69.14%), Query Frame = 0
Query:   14 RLILAIAASTLFPLTLLVSR--ASPTRVNACYIRRELESPPPPLIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFHVTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLRLKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGPAISFNHLIFHLCLWTILLICTYFVVSEQTK 280
            RL LA     L  LTL + R     T ++ CYIRRELE P P  IP+RDG LHNYSV +MW +MFLLALLP+ R  A++ LTY S+WFH+TYI LAA KAPL DF CAGRH  +PNGISGHYCYFIFVA T  R+AR RL++NP+ S L  A +ALLLTLF +GG ATLYRTFFHGYHS RQI+ G++LGI SH  LD   F+D +       L+VL A+S+ +L+ YY LWPH+ AG AI+  HL FH  LW +LL   Y   S   K
Sbjct:   11 RLALATVPLLLVLLTLALDRHPTMGTNLDTCYIRRELEKPAPTFIPMRDGPLHNYSVLVMWISMFLLALLPNGRLKAVYLLTYTSIWFHITYILLAALKAPLYDFACAGRHQFFPNGISGHYCYFIFVALTTPRFARTRLRLNPNTSRLYLAPIALLLTLFTVGGTATLYRTFFHGYHSPRQIALGAALGIFSHSVLDFFQFEDDAEPPITVSLSVLFASSLNALTSYYFLWPHVIAGAAITAGHLRFHAALWLVLLAAAYLRQSADRK 279          
BLAST of Gcaud2543.t1 vs. uniprot
Match: A0A1X6PD70_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD70_PORUM)

HSP 1 Score: 137 bits (346), Expect = 4.430e-35
Identity = 108/306 (35.29%), Postives = 147/306 (48.04%), Query Frame = 0
Query:   15 LILAIAASTLFPLTLLVSRASPTRVNACYIRRELESP---PPPL-IPLRDGALHNYSVYIMWTAMFLLAL-LPHARASALFSLTYASLWFHVTYIYLAAFKAPLDDFNC-AGRHTQYPNGISGHYCYFIFVA-----FTASRYARL--------RLKVNPHASPLLKALV---------------ALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGP-AISFNHLIFHLCLWTILLICTYFVVSEQTKSPKEE 285
            ++L  AA TL  L+     A  T ++AC I R+ E P   P PL +PL D ALH+ SV  +W    L A+ LP  R  A+  +   +LWF  TY    A K  L D  C + R   YPNG+SGH+CYF FVA     +TA R A +        R  V   A+P   A V               A LL LF IGG ATL RT+ HGYHS +Q+  G++ GI S+ A+DA+ F   +      +L V+ A    +LS Y   WP   AG  A++   L+ +   W ++     +      + P  E
Sbjct:    1 MLLVAAAPTLMRLS--SDHALSTTLHACVINRQAEGPRRPPSPLSLPLGDSALHDASVTTVWAYGLLTAVGLPVERPKAVLDIALTTLWFQATYWAADAAKGALGDDRCTSARRATYPNGVSGHFCYFTFVALAVAVYTADRLADVAATPALSTRRPVTTGAAPGSDAAVMAGVPQALLGVVTAAAGLLGLFTIGGVATLVRTYAHGYHSGQQVLLGAAAGIASYLAVDALHFCGATAPHLGVQLAVVAAAGGGALSAYAAAWPSAVAGEEAVTGRQLVGYAAAWLVVAAVVGWEWLRLPRGPPRE 304          
BLAST of Gcaud2543.t1 vs. uniprot
Match: M2WV89_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WV89_GALSU)

HSP 1 Score: 132 bits (332), Expect = 5.680e-33
Identity = 86/251 (34.26%), Postives = 128/251 (51.00%), Query Frame = 0
Query:   39 VNACYIRRELESPPPP---LIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFHVTYIYLAAFKAPLDDFNCA-GRHTQYPNGISGHYCYFIFVAFTASRYARLRLKV--NPHASPLLKALVA---------LLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLS---LYY--RLWPHISAGPAISFNHLIFHLCLWTILLI 269
            ++ C + R +E  PP    +IP+RD  LHN++V  +W  + L       + +A+F +++ SLWFH+TY +L   K  LDD  C+ GR    PN ISGHYCYF F   + +   +++     +      LKA +          L L  F IG   T+YRTFFHGYHS RQI +G  LG LSH  ++ VL++    +    R  +L+   +  LS   L++    WP    G  +    ++ H+  W IL I
Sbjct:   35 LDLCVVDRAVEKLPPVNSFVIPIRDSLLHNFTVATLWMLLVLFIFTSPKKGAAIFLVSFVSLWFHLTYWFLLLVKGWLDDATCSFGRFIGQPNSISGHYCYFTFCFLSLTSLFQVKQLYWRDSRRGKQLKATLLWILENYISKLFLYTFIIGSIVTVYRTFFHGYHSLRQILYGLGLGCLSHALMETVLWE----YFIAGRHVLLILGILALLSPNLLFFCTLFWPFPVYGYPVGSKQVMGHIINWLILFI 281          
BLAST of Gcaud2543.t1 vs. uniprot
Match: A0A5J4YPC0_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YPC0_PORPP)

HSP 1 Score: 103 bits (258), Expect = 3.490e-22
Identity = 80/245 (32.65%), Postives = 116/245 (47.35%), Query Frame = 0
Query:   46 RELESPPPPLIPLRDGALHNYSVYIMWTAMFLLALLP-------HARASALFSLTYASLWFHVTYIYLAAFKAPLDDFNC-AGRHTQYPNGISGHYCYFIFVAF-----------TASRYARLRLKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISA-GPAISFNHLIFHLCLWTILLIC 270
            R LES P       D  L++ +V  MW     +A +        H R +  F L +A LWFH +Y +L   KA L D NC + R   YPNG+SGHY YF F +            T+ R+ R   + N   +    AL  L+  ++ +    TLYRT+ HGYHSARQ+  G +  ILSH +L  +L  D        +  +L   +          WP  +A GPAI    L+  + +W+I+++C
Sbjct:   94 RALESVP-------DNVLNHVAVACMWLTALGIACMASVRSRPAHRRWAPWFELAFAVLWFHASYWFLYVAKAWLGDVNCNSARAPFYPNGVSGHYAYFGFCSLGLPVFFAAHLQTSQRHER---RQNEKTNAFFSALY-LVAMVYALTSSITLYRTYAHGYHSARQVLLGVATAILSHVSLLEMLGSDT--VAPLHKCAILALFTACGFMGTRSTWPVEAARGPAIGNVQLLVQVSMWSIVILC 325          
BLAST of Gcaud2543.t1 vs. uniprot
Match: A0A2P6N1J0_9EUKA (Rap guanine nucleotide exchange factor 1-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N1J0_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.150e-8
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = 0
Query:   90 FSLTYASLWFHVTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLRLKVNP---------HASPLLK---------ALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSLGILSHCALDAVLFQDGSG 218
            F ++Y  +W+  TY    +FK  L D+ C+ RH    N +SGHYCY IF   + + Y  +RL+ NP         H   L            +++L LT+       TL +T+  GYH+ +QI +GS L +LSH  L  +L +   G
Sbjct:  587 FVVSYTIVWYICTYCLCYSFKEILGDYKCS-RHA---NSVSGHYCYHIFYMLSVA-YLTVRLERNPQVLSGYYQSHGRILSMFSRSMRPSHRMISLFLTVIYACSLFTLSQTYLFGYHTPKQIFYGSLLAVLSHSTLIYLLERGCKG 728          
The following BLAST results are available for this feature:
BLAST of Gcaud2543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J6U3_9FLOR5.230e-14774.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBL7_CHOCR5.410e-9957.62Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PD70_PORUM4.430e-3535.29Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2WV89_GALSU5.680e-3334.26Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A5J4YPC0_PORPP3.490e-2232.65Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A2P6N1J0_9EUKA1.150e-832.65Rap guanine nucleotide exchange factor 1-like n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 148..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 243..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 182..192
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 276..285
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 225..242
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 254..275
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 159..181
NoneNo IPR availableTMHMMTMhelixcoord: 61..80
NoneNo IPR availableTMHMMTMhelixcoord: 129..147
NoneNo IPR availableTMHMMTMhelixcoord: 257..276
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_146_length_43567_cov_5.009154contigNODE_146_length_43567_cov_5.009154:23422..24279 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2543.t1Gcaud2543.t1Gracilaria caudata M_176_S67 malemRNANODE_146_length_43567_cov_5.009154 23422..24279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MSTDARSYPYYNTRLILAIAASTLFPLTLLVSRASPTRVNACYIRRELES
PPPPLIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFH
VTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLR
LKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSL
GILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGP
AISFNHLIFHLCLWTILLICTYFVVSEQTKSPKEE*
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