Gcaud2543.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2543.t1
Unique Name	Gcaud2543.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:23422..24279 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2543	Gcaud2543	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 23422..24279 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2543.t1.stop1	Gcaud2543.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 23422..23424 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2543.t1.CDS1	Gcaud2543.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 23422..24279 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2543.t1.exon1	Gcaud2543.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 23422..24279 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2543.t1.start1	Gcaud2543.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 24277..24279 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2543.t1	Gcaud2543.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 23422..24279 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:23422..24279-
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:23422..24279-

mRNA sequence

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=286bp
MSTDARSYPYYNTRLILAIAASTLFPLTLLVSRASPTRVNACYIRRELES
PPPPLIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFH
VTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLR
LKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSL
GILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGP
AISFNHLIFHLCLWTILLICTYFVVSEQTKSPKEE*

spliced messenger RNA

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:23422..24279- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACCGACGCTCGTTCCTATCCGTACTACAACACACGTCTCATTCT
GGCCATAGCTGCCTCAACTCTCTTTCCCCTCACCTTACTCGTATCCCGTG
CGTCACCAACTCGCGTCAATGCCTGTTACATTCGCCGCGAACTAGAGTCG
CCCCCACCACCACTAATCCCACTACGAGATGGCGCGCTGCACAACTATTC
CGTGTACATTATGTGGACAGCCATGTTTCTGCTTGCACTTCTTCCGCATG
CTCGAGCCTCAGCCCTCTTCTCCTTGACGTATGCATCGCTTTGGTTTCAT
GTCACCTATATCTACCTCGCTGCTTTCAAGGCACCTTTGGATGACTTTAA
CTGCGCAGGTCGACATACACAGTACCCGAACGGGATCTCTGGTCACTATT
GTTACTTCATCTTCGTTGCTTTCACAGCTTCCCGTTATGCGCGTCTTCGA
CTGAAAGTGAATCCCCATGCATCGCCTTTGCTCAAAGCTCTTGTCGCCTT
ACTTTTGACACTGTTTGGAATTGGTGGGTTTGCTACTCTATATCGCACTT
TCTTTCATGGCTATCATTCAGCACGTCAGATCTCTTTCGGATCTTCACTT
GGTATTCTCTCTCATTGCGCTTTGGATGCAGTTCTCTTTCAAGACGGAAG
CGGCTTCGGTACGGACAAGCGTTTAACCGTTTTGCTTGCTAACTCCATTA
CTAGTCTTAGCTTGTATTATCGACTGTGGCCACATATTTCTGCTGGACCA
GCCATCTCGTTCAATCATCTCATATTCCACCTCTGTCTGTGGACCATCCT
ATTAATTTGCACATACTTCGTCGTATCAGAACAAACAAAGTCTCCAAAGG
AAGAGTGA

protein sequence of Gcaud2543.t1

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MSTDARSYPYYNTRLILAIAASTLFPLTLLVSRASPTRVNACYIRRELES
PPPPLIPLRDGALHNYSVYIMWTAMFLLALLPHARASALFSLTYASLWFH
VTYIYLAAFKAPLDDFNCAGRHTQYPNGISGHYCYFIFVAFTASRYARLR
LKVNPHASPLLKALVALLLTLFGIGGFATLYRTFFHGYHSARQISFGSSL
GILSHCALDAVLFQDGSGFGTDKRLTVLLANSITSLSLYYRLWPHISAGP
AISFNHLIFHLCLWTILLICTYFVVSEQTKSPKEE*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:23422..24279-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:23422..24279- (Gracilaria caudata M_176_S67 male)
ATGTCAACCGACGCTCGTTCCTATCCGTACTACAACACACGTCTCATTCT
GGCCATAGCTGCCTCAACTCTCTTTCCCCTCACCTTACTCGTATCCCGTG
CGTCACCAACTCGCGTCAATGCCTGTTACATTCGCCGCGAACTAGAGTCG
CCCCCACCACCACTAATCCCACTACGAGATGGCGCGCTGCACAACTATTC
CGTGTACATTATGTGGACAGCCATGTTTCTGCTTGCACTTCTTCCGCATG
CTCGAGCCTCAGCCCTCTTCTCCTTGACGTATGCATCGCTTTGGTTTCAT
GTCACCTATATCTACCTCGCTGCTTTCAAGGCACCTTTGGATGACTTTAA
CTGCGCAGGTCGACATACACAGTACCCGAACGGGATCTCTGGTCACTATT
GTTACTTCATCTTCGTTGCTTTCACAGCTTCCCGTTATGCGCGTCTTCGA
CTGAAAGTGAATCCCCATGCATCGCCTTTGCTCAAAGCTCTTGTCGCCTT
ACTTTTGACACTGTTTGGAATTGGTGGGTTTGCTACTCTATATCGCACTT
TCTTTCATGGCTATCATTCAGCACGTCAGATCTCTTTCGGATCTTCACTT
GGTATTCTCTCTCATTGCGCTTTGGATGCAGTTCTCTTTCAAGACGGAAG
CGGCTTCGGTACGGACAAGCGTTTAACCGTTTTGCTTGCTAACTCCATTA
CTAGTCTTAGCTTGTATTATCGACTGTGGCCACATATTTCTGCTGGACCA
GCCATCTCGTTCAATCATCTCATATTCCACCTCTGTCTGTGGACCATCCT
ATTAATTTGCACATACTTCGTCGTATCAGAACAAACAAAGTCTCCAAAGG
AAGAGTGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:23422..24279-

>Gcaud2543.t1 ID=Gcaud2543.t1|Name=Gcaud2543.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=858bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:23422..24279- (Gracilaria caudata M_176_S67 male)
ATGTCAACCGACGCTCGTTCCTATCCGTACTACAACACACGTCTCATTCT
GGCCATAGCTGCCTCAACTCTCTTTCCCCTCACCTTACTCGTATCCCGTG
CGTCACCAACTCGCGTCAATGCCTGTTACATTCGCCGCGAACTAGAGTCG
CCCCCACCACCACTAATCCCACTACGAGATGGCGCGCTGCACAACTATTC
CGTGTACATTATGTGGACAGCCATGTTTCTGCTTGCACTTCTTCCGCATG
CTCGAGCCTCAGCCCTCTTCTCCTTGACGTATGCATCGCTTTGGTTTCAT
GTCACCTATATCTACCTCGCTGCTTTCAAGGCACCTTTGGATGACTTTAA
CTGCGCAGGTCGACATACACAGTACCCGAACGGGATCTCTGGTCACTATT
GTTACTTCATCTTCGTTGCTTTCACAGCTTCCCGTTATGCGCGTCTTCGA
CTGAAAGTGAATCCCCATGCATCGCCTTTGCTCAAAGCTCTTGTCGCCTT
ACTTTTGACACTGTTTGGAATTGGTGGGTTTGCTACTCTATATCGCACTT
TCTTTCATGGCTATCATTCAGCACGTCAGATCTCTTTCGGATCTTCACTT
GGTATTCTCTCTCATTGCGCTTTGGATGCAGTTCTCTTTCAAGACGGAAG
CGGCTTCGGTACGGACAAGCGTTTAACCGTTTTGCTTGCTAACTCCATTA
CTAGTCTTAGCTTGTATTATCGACTGTGGCCACATATTTCTGCTGGACCA
GCCATCTCGTTCAATCATCTCATATTCCACCTCTGTCTGTGGACCATCCT
ATTAATTTGCACATACTTCGTCGTATCAGAACAAACAAAGTCTCCAAAGG
AAGAGTGA