Gcaud2534.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2534.t1
Unique NameGcaud2534.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Homology
BLAST of Gcaud2534.t1 vs. uniprot
Match: A0A5J5CY97_9PERO (Uncharacterized protein n=1 Tax=Etheostoma spectabile TaxID=54343 RepID=A0A5J5CY97_9PERO)

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-8
Identity = 54/167 (32.34%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   17 IDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRAR-----FAAGQYGNRAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQLRSE---SGDINKIVLFGDGRNNMGADPV--SRANEFRAQNGGEVCTVGVGF-IDDQGKQTLKDIAGSDERVFLVDHSF 172
            +DSS SV    F   K F+   A       + R      A GQY   A +  GLT +++L +RQ+ SA FQND  T++  A+EF    LR     SG   K+VLF DGR+    +P    R  E  A    E+  + VG  +++   +TL      D+  +   H F
Sbjct:  433 MDSSASVGQKNFQTSKAFVHRLAERFLTSEKKRGATVNVAVGQYSRSASMEQGLTTNLTLLSRQIESATFQND-GTNVLEAMEFAMKNLRGRGDASGGKKKLVLFSDGRSQAVTEPQLEKRVREV-ADARVELFVISVGSQVNEANLRTLVSRGRRDDLTYAQRHLF 597          
BLAST of Gcaud2534.t1 vs. uniprot
Match: A0A2V3IQ26_9FLOR (Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ26_9FLOR)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-7
Identity = 54/183 (29.51%), Postives = 84/183 (45.90%), Query Frame = 0
Query:   11 VNLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLD-------PRARFAAGQYGNRAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQLRSESGDINKIVLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQGKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDIC 186
            +N+CFAID SGS++  +F      I+ T AI+ +        P +  +A  + + A LI   T D++    Q      Q    TS G+A++ C  Q+ S + D   IVL  DG +N      S A   +  NG  + T+G+G        +L+ IA S +    VD        +E +V+ IC
Sbjct:   77 LNVCFAIDESGSISPTDF------IEQTEAIVAIAQELSTFAPGSTLSAVGFSSFAELIQSPTTDINGEFVQAIQGNSQLGGTTSSGAALQLCQTQIASAA-DPRIIVLLTDGADNTMPFGTSVAGGIK-NNGIIIITIGIG--SGINAPSLRSIASSPDLFIFVDDFSSFEDSIEVIVDTIC 249          
BLAST of Gcaud2534.t1 vs. uniprot
Match: M7B9T5_CHEMY (Collagen alpha-6(VI) chain n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7B9T5_CHEMY)

HSP 1 Score: 58.5 bits (140), Expect = 1.230e-6
Identity = 51/181 (28.18%), Postives = 84/181 (46.41%), Query Frame = 0
Query:   12 NLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRA-RFAAGQYGN--RAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQLRSESGD-INKI-VLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQGKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICG 187
            ++ F ID SGS+   +F   K F+ +      +     RF   QY +  +   +      V+     V   Q Q+   T+ G A+ +  +     + D + K+ ++  DG +    D V++A E   Q G  +  VGVG+     K+ LKDIAG++ER+F V+    L  +  D+V DIC 
Sbjct:  429 DIYFLIDGSGSIFPNDFQDMKVFMNEMILTFPVSANGVRFGVVQYASTPQTEFVISQYSSVNQLKEAVRVIQ-QSGGGTNTGDALRYMKSLFAKATRDNVPKLLIVITDGESQ---DQVTKAAEELRQEGIVIYAVGVGYAV---KKELKDIAGTEERMFFVNDFDSLKLIKHDIVQDICS 602          
BLAST of Gcaud2534.t1 vs. uniprot
Match: UPI001CA9B311 (LOW QUALITY PROTEIN: collagen alpha-4(VI) chain n=2 Tax=Chelonioidea TaxID=27791 RepID=UPI001CA9B311)

HSP 1 Score: 58.5 bits (140), Expect = 1.260e-6
Identity = 51/181 (28.18%), Postives = 84/181 (46.41%), Query Frame = 0
Query:   12 NLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRA-RFAAGQYGN--RAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQLRSESGD-INKI-VLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQGKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICG 187
            ++ F ID SGS+   +F   K F+ +      +     RF   QY +  +   +      V+     V   Q Q+   T+ G A+ +  +     + D + K+ ++  DG +    D V++A E   Q G  +  VGVG+     K+ LKDIAG++ER+F V+    L  +  D+V DIC 
Sbjct:  887 DIYFLIDGSGSIFPNDFQDMKVFMNEMILTFPVSANGVRFGVVQYASTPQTEFVISQYSSVNQLKEAVRVIQ-QSGGGTNTGDALRYMKSLFAKATRDNVPKLLIVITDGESQ---DQVTKAAEELRQEGIVIYAVGVGYAV---KKELKDIAGTEERMFFVNDFDSLKLIKHDIVQDICS 1060          
BLAST of Gcaud2534.t1 vs. uniprot
Match: A0A7K7AVH9_9AVES (CO6A6 protein (Fragment) n=4 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7AVH9_9AVES)

HSP 1 Score: 56.2 bits (134), Expect = 7.670e-6
Identity = 44/185 (23.78%), Postives = 88/185 (47.57%), Query Frame = 0
Query:   12 NLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPR-ARFAAGQYGNRAY--LISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDN----QLRSESGDINKIVLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQGKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICGLH 189
            ++ F +D SGS+N  +F   K F+ +T  +  +     RF   QY  R     + G    +   +  + +  +Q    T  G+A+ F  +     +R+    I  ++  G+ ++ +       A E R QN   +  + +G + +  ++ L++IAG+ ++VFLV+    L+ +  D+V DIC ++
Sbjct:  401 DIYFLVDGSGSINVSDFKDMKTFMNETIRMFQVGANMVRFGVVQYAERTRTEFVIGQHNSIKALSEAIWN-MWQIGGGTQTGNALRFMKSLFKKTVRNNVPQILVVITDGESQDKV----AQSAKELREQN---IVILAIG-VKNAVQRELEEIAGTKDKVFLVNDYNSLMLINHDIVQDICSMN 576          
The following BLAST results are available for this feature:
BLAST of Gcaud2534.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5J5CY97_9PERO2.800e-832.34Uncharacterized protein n=1 Tax=Etheostoma spectab... [more]
A0A2V3IQ26_9FLOR1.980e-729.51Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
M7B9T5_CHEMY1.230e-628.18Collagen alpha-6(VI) chain n=1 Tax=Chelonia mydas ... [more]
UPI001CA9B3111.260e-628.18LOW QUALITY PROTEIN: collagen alpha-4(VI) chain n=... [more]
A0A7K7AVH9_9AVES7.670e-623.78CO6A6 protein (Fragment) n=4 Tax=Nothoprocta TaxID... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 10..179
e-value: 1.8E-18
score: 77.3
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 12..174
e-value: 3.3E-18
score: 66.6
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 12..185
score: 15.888225
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 11..189
e-value: 5.9E-26
score: 93.6
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 8..187
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 11..166
e-value: 2.08644E-16
score: 70.7834

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3872_length_2834_cov_5.020416contigNODE_3872_length_2834_cov_5.020416:892..1473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2534.t1Gcaud2534.t1Gracilaria caudata M_176_S67 malemRNANODE_3872_length_2834_cov_5.020416 892..1473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MSQVRSGGCGVNLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRARF
AAGQYGNRAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQL
RSESGDINKIVLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQ
GKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICGLHLQLS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf