Gcaud2534.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2534.t1
Unique Name	Gcaud2534.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3872_length_2834_cov_5.020416	contig	NODE_3872_length_2834_cov_5.020416:892..1473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002585923.1
Preferred name	COL6A6
PFAMs	Collagen,Kunitz_BPTI,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06236,ko:K06238,ko:K19720
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOs	GO:0005575,GO:0005576,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030198,GO:0031012,GO:0032991,GO:0043062,GO:0043933,GO:0044085,GO:0044421,GO:0051259,GO:0051291,GO:0065003,GO:0070206,GO:0070208,GO:0071840
Evalue	3.52e-08
EggNOG OGs	KOG1217@1\|root,KOG3544@1\|root,KOG4297@1\|root,KOG1217@2759\|Eukaryota,KOG3544@2759\|Eukaryota,KOG4297@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa,3CSUY@33213\|Bilateria,4858V@7711\|Chordata
Description	biological adhesion
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2534	Gcaud2534	Gracilaria caudata M_176_S67 male	gene	NODE_3872_length_2834_cov_5.020416 892..1473 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2534.t1.start1	Gcaud2534.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3872_length_2834_cov_5.020416 892..894 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2534.t1.CDS1	Gcaud2534.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3872_length_2834_cov_5.020416 892..1473 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2534.t1.exon1	Gcaud2534.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3872_length_2834_cov_5.020416 892..1473 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2534.t1.stop1	Gcaud2534.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3872_length_2834_cov_5.020416 1471..1473 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2534.t1	Gcaud2534.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3872_length_2834_cov_5.020416 892..1473 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+
coding sequence from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+

mRNA sequence

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MSQVRSGGCGVNLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRARF
AAGQYGNRAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQL
RSESGDINKIVLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQ
GKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICGLHLQLS*

spliced messenger RNA

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAAGTGCGCTCCGGAGGATGTGGTGTGAATTTGTGTTTTGCGAT
TGACTCAAGTGGATCGGTGAACACGATGGAATTTGCCATGCAGAAGTACT
TCATCCAGGATACCGCTGCCATCATTGGATTAGATCCGCGCGCCAGGTTC
GCCGCCGGCCAATATGGTAACCGAGCATACTTAATTTCTGGTCTAACTGG
CGATGTCTCATTATTCAATAGACAGGTGAACAGTGCCCAGTTCCAGAATG
ATTCGGCTACCTCAATGGGATCGGCTATTGAGTTTTGTGACAATCAGCTG
AGGAGCGAATCGGGCGATATCAACAAGATCGTTCTGTTTGGAGATgggcg
taacaacatgggagccgacccggtcagtcgcgcaaatgagttccgtgcgc
aaAATGGAGGAGAAGTGTGCACGGTTGGGGTGGGATTCATAGACGACCAG
GGCAAGCAGACGCTCAAGGATATTGCTGGCAGTGACGAAAGAGTGTTCCT
GGTGGACCATTCTTTTGAATTGTTATTTCTTGTGGAAGATCTTGTGAATG
ACATATGTGGCTTGCACCTTCAACTATCTTAA

protein sequence of Gcaud2534.t1

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MSQVRSGGCGVNLCFAIDSSGSVNTMEFAMQKYFIQDTAAIIGLDPRARF
AAGQYGNRAYLISGLTGDVSLFNRQVNSAQFQNDSATSMGSAIEFCDNQL
RSESGDINKIVLFGDGRNNMGADPVSRANEFRAQNGGEVCTVGVGFIDDQ
GKQTLKDIAGSDERVFLVDHSFELLFLVEDLVNDICGLHLQLS*

mRNA from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+ (Gracilaria caudata M_176_S67 male)
ATGTCGCAAGTGCGCTCCGGAGGATGTGGTGTGAATTTGTGTTTTGCGAT
TGACTCAAGTGGATCGGTGAACACGATGGAATTTGCCATGCAGAAGTACT
TCATCCAGGATACCGCTGCCATCATTGGATTAGATCCGCGCGCCAGGTTC
GCCGCCGGCCAATATGGTAACCGAGCATACTTAATTTCTGGTCTAACTGG
CGATGTCTCATTATTCAATAGACAGGTGAACAGTGCCCAGTTCCAGAATG
ATTCGGCTACCTCAATGGGATCGGCTATTGAGTTTTGTGACAATCAGCTG
AGGAGCGAATCGGGCGATATCAACAAGATCGTTCTGTTTGGAGATgggcg
taacaacatgggagccgacccggtcagtcgcgcaaatgagttccgtgcgc
aaAATGGAGGAGAAGTGTGCACGGTTGGGGTGGGATTCATAGACGACCAG
GGCAAGCAGACGCTCAAGGATATTGCTGGCAGTGACGAAAGAGTGTTCCT
GGTGGACCATTCTTTTGAATTGTTATTTCTTGTGGAAGATCTTGTGAATG
ACATATGTGGCTTGCACCTTCAACTATCTTAA

Coding sequence (CDS) from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+

>Gcaud2534.t1 ID=Gcaud2534.t1|Name=Gcaud2534.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_3872_length_2834_cov_5.020416:892..1473+ (Gracilaria caudata M_176_S67 male)
ATGTCGCAAGTGCGCTCCGGAGGATGTGGTGTGAATTTGTGTTTTGCGAT
TGACTCAAGTGGATCGGTGAACACGATGGAATTTGCCATGCAGAAGTACT
TCATCCAGGATACCGCTGCCATCATTGGATTAGATCCGCGCGCCAGGTTC
GCCGCCGGCCAATATGGTAACCGAGCATACTTAATTTCTGGTCTAACTGG
CGATGTCTCATTATTCAATAGACAGGTGAACAGTGCCCAGTTCCAGAATG
ATTCGGCTACCTCAATGGGATCGGCTATTGAGTTTTGTGACAATCAGCTG
AGGAGCGAATCGGGCGATATCAACAAGATCGTTCTGTTTGGAGATgggcg
taacaacatgggagccgacccggtcagtcgcgcaaatgagttccgtgcgc
aaAATGGAGGAGAAGTGTGCACGGTTGGGGTGGGATTCATAGACGACCAG
GGCAAGCAGACGCTCAAGGATATTGCTGGCAGTGACGAAAGAGTGTTCCT
GGTGGACCATTCTTTTGAATTGTTATTTCTTGTGGAAGATCTTGTGAATG
ACATATGTGGCTTGCACCTTCAACTATCTTAA