Gcaud2527.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2527.t1
Unique NameGcaud2527.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length302
Homology
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BLAST of Gcaud2527.t1 vs. uniprot
Match: A0A2V3J0M1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0M1_9FLOR)

HSP 1 Score: 159 bits (402), Expect = 5.810e-44
Identity = 97/232 (41.81%), Postives = 127/232 (54.74%), Query Frame = 0 
Query:   72 PPPSQLGLNSNSYNEFTFNTKFNSTDHSDAPQAVYDLKADDVRSVLDLLDNTIL-IGVNISALNEFAGVLQQAFDEEQGAIFYNLKKKKWMFCAWLDAFDNGAY-LRLCASLTSFGFADIQRNPVPGKDYVTTENINVMIYNGTVVEIGNNENNLPGEXXXXXXXXXXRQQMTHTTVKQSDAVYVDLTGTQSTYEDTCLDHEANIHSDCYAFCCNSLYVGSHFCTDFPHNCI 301
            P  S    NSN+YN FTFN  FNS    D P A YD +   +R +L+LLD  ++  G N S L    G L ++F++E GAIFY++   +WMFC WLD F N  Y LRLCA LTSFG  DI R P+  +DYV  E++  MI    V +   N   +P              ++ +   +    + V+L   + TYE  CL +      DC+AFCCNS YVGS FCTDFP NC+
Sbjct:   27 PHNSSYDFNSNNYNNFTFNAFFNSLSKPDFPGAYYDEEGPTIRWILNLLDTGLIHYGSNHSVLVLLQGSLLKSFEDETGAIFYSIHSNRWMFCGWLDLFLNEVYFLRLCAKLTSFGLTDITRIPISKEDYVLQEDMVNMI---GVTDRTVNTKAIPDA----------NSRLPNPATR--GVIDVNLDDYEDTYERNCLANSHLADQDCHAFCCNSYYVGSPFCTDFPVNCL 243
The following BLAST results are available for this feature:
BLAST of Gcaud2527.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J0M1_9FLOR5.810e-4441.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..301
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availableTMHMMTMhelixcoord: 5..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:8004..8998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2527.t1Gcaud2527.t1Gracilaria caudata M_176_S67 malemRNANODE_290_length_32094_cov_4.541512 8004..8998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=302bp
MVTSLVLLAFLIICPLNVSVVIERASTIKFKHALHKAMRPLLQGNPLTAL
AHGMAHKTKRNSSIKTVPSLSPPPSQLGLNSNSYNEFTFNTKFNSTDHSD
APQAVYDLKADDVRSVLDLLDNTILIGVNISALNEFAGVLQQAFDEEQGA
IFYNLKKKKWMFCAWLDAFDNGAYLRLCASLTSFGFADIQRNPVPGKDYV
TTENINVMIYNGTVVEIGNNENNLPGEEEEEDMPDDDRQQMTHTTVKQSD
AVYVDLTGTQSTYEDTCLDHEANIHSDCYAFCCNSLYVGSHFCTDFPHNC
I*
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