Gcaud2527.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2527.t1
Unique Name	Gcaud2527.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	302

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:8004..8998 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2527	Gcaud2527	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 8004..8998 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1	Gcaud2527.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 8004..8998 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1.start1	Gcaud2527.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 8004..8006 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1.CDS1	Gcaud2527.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 8004..8802 +
Gcaud2527.t1.CDS2	Gcaud2527.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 8892..8998 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1.exon1	Gcaud2527.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 8004..8802 +
Gcaud2527.t1.exon2	Gcaud2527.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 8892..8998 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1.intron1	Gcaud2527.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_290_length_32094_cov_4.541512 8803..8891 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2527.t1.stop1	Gcaud2527.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 8996..8998 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+

mRNA sequence

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=302bp
MVTSLVLLAFLIICPLNVSVVIERASTIKFKHALHKAMRPLLQGNPLTAL
AHGMAHKTKRNSSIKTVPSLSPPPSQLGLNSNSYNEFTFNTKFNSTDHSD
APQAVYDLKADDVRSVLDLLDNTILIGVNISALNEFAGVLQQAFDEEQGA
IFYNLKKKKWMFCAWLDAFDNGAYLRLCASLTSFGFADIQRNPVPGKDYV
TTENINVMIYNGTVVEIGNNENNLPGEEEEEDMPDDDRQQMTHTTVKQSD
AVYVDLTGTQSTYEDTCLDHEANIHSDCYAFCCNSLYVGSHFCTDFPHNC
I*

spliced messenger RNA

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACATCTCTTGTTCTTCTGGCCTTTCTCATTATCTGTCCGCTGAA
TGTATCTGTCGTCATTGAAAGGGCCAGTACCATCAAGTTCAAGCACGCTC
TCCACAAAGCTATGCGCCCCTTATTACAAGGAAATCCACTAACAGCTTTG
GCACACGGCATGGCGCACAAAACGAAACGGAATAGTTCGATCAAAACAGT
TCCCTCTCTTTCTCCCCCGCCGTCACAGCTTGGTTTGAACTCTAACAGTT
ACAATGAGTTCACGTTCAACACAAAGTTTAACTCGACAGACCACTCAGAT
GCACCTCAGGCGGTCTATGATCTTAAGGCTGACGATGTTCGTTCGGTTCT
GGACCTTCTCGATAACACCATTTTAATTGGAGTGAACATTTCGGCATTGA
ACGAGTTTGCAGGAGTACTTCAACAGGCATTTGATGAAGAACAGGGCGCC
ATTTTCTACAACCTTAAAAAGAAGAAATGGATGTTTTGTGCATGGCTTGA
TGCCTTTGACAACGGAGCATATCTTCGTCTGTGTGCGTCGCTCACTTCGT
TCGGGTTTGCAGATATACAGAGGAATCCGGTTCCAGGCAAAGACTATGTT
ACGACTGAAAACATAAACGTGATGATATACAACGGCACAGTTGTAGAGAT
CGGGAACAATGAGAACAATCTGCCGGGCgaagaagaagaagaagaTATGC
CTGACGATGACAGGCAGCAAATGACGCACACCACTGTTAAACAAAGTGAT
GCCGTCTACGTTGACCTCACCGGAACCCAAAGCACATATGAGGATACATG
CCTGGACCACGAAGCAAACATACATTCTGACTGTTATGCATTCTGCTGCA
ACTCGCTCTATGTCGGATCGCATTTTTGCACTGACTTCCCTCATAACTGC
ATCTAA

protein sequence of Gcaud2527.t1

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=302bp
MVTSLVLLAFLIICPLNVSVVIERASTIKFKHALHKAMRPLLQGNPLTAL
AHGMAHKTKRNSSIKTVPSLSPPPSQLGLNSNSYNEFTFNTKFNSTDHSD
APQAVYDLKADDVRSVLDLLDNTILIGVNISALNEFAGVLQQAFDEEQGA
IFYNLKKKKWMFCAWLDAFDNGAYLRLCASLTSFGFADIQRNPVPGKDYV
TTENINVMIYNGTVVEIGNNENNLPGEEEEEDMPDDDRQQMTHTTVKQSD
AVYVDLTGTQSTYEDTCLDHEANIHSDCYAFCCNSLYVGSHFCTDFPHNC
I*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=995bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+ (Gracilaria caudata M_176_S67 male)
ATGGTCACATCTCTTGTTCTTCTGGCCTTTCTCATTATCTGTCCGCTGAA
TGTATCTGTCGTCATTGAAAGGGCCAGTACCATCAAGTTCAAGCACGCTC
TCCACAAAGCTATGCGCCCCTTATTACAAGGAAATCCACTAACAGCTTTG
GCACACGGCATGGCGCACAAAACGAAACGGAATAGTTCGATCAAAACAGT
TCCCTCTCTTTCTCCCCCGCCGTCACAGCTTGGTTTGAACTCTAACAGTT
ACAATGAGTTCACGTTCAACACAAAGTTTAACTCGACAGACCACTCAGAT
GCACCTCAGGCGGTCTATGATCTTAAGGCTGACGATGTTCGTTCGGTTCT
GGACCTTCTCGATAACACCATTTTAATTGGAGTGAACATTTCGGCATTGA
ACGAGTTTGCAGGAGTACTTCAACAGGCATTTGATGAAGAACAGGGCGCC
ATTTTCTACAACCTTAAAAAGAAGAAATGGATGTTTTGTGCATGGCTTGA
TGCCTTTGACAACGGAGCATATCTTCGTCTGTGTGCGTCGCTCACTTCGT
TCGGGTTTGCAGATATACAGAGGAATCCGGTTCCAGGCAAAGACTATGTT
ACGACTGAAAACATAAACGTGATGATATACAACGGCACAGTTGTAGAGAT
CGGGAACAATGAGAACAATCTGCCGGGCgaagaagaagaagaagaTATGC
CTGACGATGACAGGCAGCAAATGACGCACACCACTGTTAAACAAAGTGAT
GCCGTCTACGTTGACCTCACCGGAACCCAAAGCACATATGAGGATACATG
TAAGTTGATTCCTATCTTCATCGTCAAATACATGAGAAGTTGTAGTTGTA
CTAACTTTTGATTTCTGATGTGGGCACATGAAAAACAGGCCTGGACCACG
AAGCAAACATACATTCTGACTGTTATGCATTCTGCTGCAACTCGCTCTAT
GTCGGATCGCATTTTTGCACTGACTTCCCTCATAACTGCATCTAA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+

>Gcaud2527.t1 ID=Gcaud2527.t1|Name=Gcaud2527.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=906bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:8004..8998+ (Gracilaria caudata M_176_S67 male)
ATGGTCACATCTCTTGTTCTTCTGGCCTTTCTCATTATCTGTCCGCTGAA
TGTATCTGTCGTCATTGAAAGGGCCAGTACCATCAAGTTCAAGCACGCTC
TCCACAAAGCTATGCGCCCCTTATTACAAGGAAATCCACTAACAGCTTTG
GCACACGGCATGGCGCACAAAACGAAACGGAATAGTTCGATCAAAACAGT
TCCCTCTCTTTCTCCCCCGCCGTCACAGCTTGGTTTGAACTCTAACAGTT
ACAATGAGTTCACGTTCAACACAAAGTTTAACTCGACAGACCACTCAGAT
GCACCTCAGGCGGTCTATGATCTTAAGGCTGACGATGTTCGTTCGGTTCT
GGACCTTCTCGATAACACCATTTTAATTGGAGTGAACATTTCGGCATTGA
ACGAGTTTGCAGGAGTACTTCAACAGGCATTTGATGAAGAACAGGGCGCC
ATTTTCTACAACCTTAAAAAGAAGAAATGGATGTTTTGTGCATGGCTTGA
TGCCTTTGACAACGGAGCATATCTTCGTCTGTGTGCGTCGCTCACTTCGT
TCGGGTTTGCAGATATACAGAGGAATCCGGTTCCAGGCAAAGACTATGTT
ACGACTGAAAACATAAACGTGATGATATACAACGGCACAGTTGTAGAGAT
CGGGAACAATGAGAACAATCTGCCGGGCgaagaagaagaagaagaTATGC
CTGACGATGACAGGCAGCAAATGACGCACACCACTGTTAAACAAAGTGAT
GCCGTCTACGTTGACCTCACCGGAACCCAAAGCACATATGAGGATACATG
CCTGGACCACGAAGCAAACATACATTCTGACTGTTATGCATTCTGCTGCA
ACTCGCTCTATGTCGGATCGCATTTTTGCACTGACTTCCCTCATAACTGC
ATCTAA