Gcaud2523.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2523.t1
Unique NameGcaud2523.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Homology
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BLAST of Gcaud2523.t1 vs. uniprot
Match: A0A2V3J1V7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1V7_9FLOR)

HSP 1 Score: 125 bits (315), Expect = 2.040e-35
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:   26 MYFIKYWIGRGMEDPADREAKTKAHLEKIQANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYERALTDMDASAEKN 113
            MYF+KYWI + MEDP  REAKTKAHLEK+          W+ PLLPKGYWN+ G T +TKERLAEAEG ILSPY+RAL DMDASA+++
Sbjct:    1 MYFLKYWISKSMEDPEAREAKTKAHLEKMXXXXXXXXADWEIPLLPKGYWNSRGATYVTKERLAEAEGDILSPYQRALADMDASAKRS 88
The following BLAST results are available for this feature:
BLAST of Gcaud2523.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1V7_9FLOR2.040e-3565.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035204NADH-ubiquinone oxidoreductase 11kDa subunitPFAMPF17250NDUFB11coord: 24..77
e-value: 2.5E-9
score: 37.6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:1424..1983 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1Gcaud2523.t1Gracilaria caudata M_176_S67 malemRNANODE_290_length_32094_cov_4.541512 1424..1983 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
LRTLPKHVLRLSIVFLHLRSSGLFGMYFIKYWIGRGMEDPADREAKTKAH
LEKIQANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYE
RALTDMDASAEKNKHAST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035204NDUFB11