Gcaud2523.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2523.t1
Unique NameGcaud2523.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:1424..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN06244
PFAMsNDUFB11
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue0.000165
EggNOG OGs2CMPH@1|root,2S3YQ@2759|Eukaryota,37W50@33090|Viridiplantae,3GKF4@35493|Streptophyta
DescriptionNADH-ubiquinone oxidoreductase 11 kDa subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2523Gcaud2523Gracilaria caudata M_176_S67 malegeneNODE_290_length_32094_cov_4.541512 1424..1983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1Gcaud2523.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_290_length_32094_cov_4.541512 1424..1983 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1.start1Gcaud2523.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_290_length_32094_cov_4.541512 1424..1426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1.CDS1Gcaud2523.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1424..1482 +
Gcaud2523.t1.CDS2Gcaud2523.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1617..1716 +
Gcaud2523.t1.CDS3Gcaud2523.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1786..1983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1.exon1Gcaud2523.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1424..1482 +
Gcaud2523.t1.exon2Gcaud2523.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1617..1716 +
Gcaud2523.t1.exon3Gcaud2523.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1786..1983 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1.intron1Gcaud2523.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_290_length_32094_cov_4.541512 1483..1616 +
Gcaud2523.t1.intron2Gcaud2523.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_290_length_32094_cov_4.541512 1717..1785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t1.stop1Gcaud2523.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_290_length_32094_cov_4.541512 1981..1983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=119bp
LRTLPKHVLRLSIVFLHLRSSGLFGMYFIKYWIGRGMEDPADREAKTKAH
LEKIQANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYE
RALTDMDASAEKNKHAST*
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spliced messenger RNA

>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=357bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1424..1983+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCGCACTTTGCCCAAGCATGTGTTGCGCCTGTCAATCGTCTTTCTCCA
TCTCcgttcAAGCGGTTTATTCGGCATGTATTTCATCAAGTACTGGATCG
GCAGAGGGATGGAGGATCCTGCTGATAGGGAGGCGAAAACGAAAGCACAC
TTGGAAAAGATCCAAGCCAATATTCCCGTCGTCAAGAAGAGGTGGGACAC
TCCGCTTCTCCCGAAAGGTTATTGGAACGCGCCTGGCATGACTTCTATGA
CTAAGGAACGTCTTGCGGAAGCGGAAGGGCAGATTCTGTCACCATATGAG
CGTGCGCTCACAGATATGGACGCTAGCGCGGAAAAGAACAAGCATGCTTC
GACGTGA
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protein sequence of Gcaud2523.t1

>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
LRTLPKHVLRLSIVFLHLRSSGLFGMYFIKYWIGRGMEDPADREAKTKAH
LEKIQANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYE
RALTDMDASAEKNKHAST*
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mRNA from alignment at NODE_290_length_32094_cov_4.541512:1424..1983+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=560bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1424..1983+ (Gracilaria caudata M_176_S67 male)
TTGCGCACTTTGCCCAAGCATGTGTTGCGCCTGTCAATCGTCTTTCTCCA
TCTCcgttcgttcgttcgttcgttctaccttcgtATCTCCGGGTCGAAGA
CTCCGACACACACATCTAACACCTACCTCCCTTTGCAATTTCACCGCGAC
CTACACAAGTCTCGTTTCCTGCTTTTCCCCGACATCTTTTTAGAAGCGGT
TTATTCGGCATGTATTTCATCAAGTACTGGATCGGCAGAGGGATGGAGGA
TCCTGCTGATAGGGAGGCGAAAACGAAAGCACACTTGGAAAAGGTAAGAA
ACTCTCCGTATATACGTCGTGCCCCATATCACACCATCTTCCTGACCACA
GCCGTTCATTAGATCCAAGCCAATATTCCCGTCGTCAAGAAGAGGTGGGA
CACTCCGCTTCTCCCGAAAGGTTATTGGAACGCGCCTGGCATGACTTCTA
TGACTAAGGAACGTCTTGCGGAAGCGGAAGGGCAGATTCTGTCACCATAT
GAGCGTGCGCTCACAGATATGGACGCTAGCGCGGAAAAGAACAAGCATGC
TTCGACGTGA
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Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:1424..1983+

>Gcaud2523.t1 ID=Gcaud2523.t1|Name=Gcaud2523.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=357bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1424..1983+ (Gracilaria caudata M_176_S67 male)
TTGCGCACTTTGCCCAAGCATGTGTTGCGCCTGTCAATCGTCTTTCTCCA
TCTCcgttcAAGCGGTTTATTCGGCATGTATTTCATCAAGTACTGGATCG
GCAGAGGGATGGAGGATCCTGCTGATAGGGAGGCGAAAACGAAAGCACAC
TTGGAAAAGATCCAAGCCAATATTCCCGTCGTCAAGAAGAGGTGGGACAC
TCCGCTTCTCCCGAAAGGTTATTGGAACGCGCCTGGCATGACTTCTATGA
CTAAGGAACGTCTTGCGGAAGCGGAAGGGCAGATTCTGTCACCATATGAG
CGTGCGCTCACAGATATGGACGCTAGCGCGGAAAAGAACAAGCATGCTTC
GACGTGA
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