Gcaud2513.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2513.t1
Unique NameGcaud2513.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length330
Homology
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BLAST of Gcaud2513.t1 vs. uniprot
Match: A0A2V3IKX7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKX7_9FLOR)

HSP 1 Score: 363 bits (931), Expect = 8.370e-122
Identity = 186/312 (59.62%), Postives = 237/312 (75.96%), Query Frame = 0 
Query:    1 MSQNRALSIRSQKKRLTAIAWGSLAIFVMLETVLSAFSDPVTIAQDTVEDCARLVATPHATQTLTAGELGDEARILCKKIDLERGFLVKEHGANISTTIRNIQNTERAVRCEEQELYGYFRGQQVNRDVRNHTAACVGGTCVYVIVDGEDVYLSARPTHEERSLEADKTWFAFLKTRVRFKIPNEYKRQMTMRLARAMERGERDEERLRALTLLGVRTDRCVRPDDEIGGRDGTEVAAWLLAGAGVIWMVTLGAGLAAESRWARKMGFFDMGCEVQWARKSFLENFREHHAGDGEVLIRGVMVDGERCVMVV 312
            + ++ A  IR+Q++RL  IAWGSLA+FV+LETVLS F+DPVTI Q+ VEDC +LVA P A  TL AGE GDEARILC++ DL  GFLVKE GANI T       +ER V C+E+E+YGY   QQ+NRDVRN TA C+G TCV+V++DG+D+Y+S RPT EERS E +KTWF FLKT+V F++ ++ ++++ +RLARA++ GERDEERLRA TLLG R  +CVR D+   GRD T+V   +L  A VIW+V LGA +  ES W R+M FFDMGCEVQWA++SF E+  E  AG+GE  +RGV+VDGERCVMVV
Sbjct:   42 LCKSNASCIRTQRRRLKTIAWGSLAVFVLLETVLSIFNDPVTIPQNIVEDCLQLVAIPFAEDTLHAGERGDEARILCRRTDLADGFLVKELGANI-TNAEAAAESERNVWCDEREVYGYIPQQQLNRDVRNDTAVCIGKTCVFVLMDGQDLYMSPRPTSEERSREENKTWFGFLKTQVNFEVSDKLRQKVGIRLARALQSGERDEERLRAQTLLGTRKGQCVRQDESARGRDATKVETSVLIVACVIWVVALGALVVTESPWMRRMEFFDMGCEVQWAQRSFAESVDE--AGEGEAKLRGVVVDGERCVMVV 350
The following BLAST results are available for this feature:
BLAST of Gcaud2513.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKX7_9FLOR8.370e-12259.62Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 259..329
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..235
NoneNo IPR availableTMHMMTMhelixcoord: 236..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:23596..24585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2513.t1Gcaud2513.t1Gracilaria caudata M_176_S67 malemRNANODE_441_length_25217_cov_4.561570 23596..24585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=330bp
MSQNRALSIRSQKKRLTAIAWGSLAIFVMLETVLSAFSDPVTIAQDTVED
CARLVATPHATQTLTAGELGDEARILCKKIDLERGFLVKEHGANISTTIR
NIQNTERAVRCEEQELYGYFRGQQVNRDVRNHTAACVGGTCVYVIVDGED
VYLSARPTHEERSLEADKTWFAFLKTRVRFKIPNEYKRQMTMRLARAMER
GERDEERLRALTLLGVRTDRCVRPDDEIGGRDGTEVAAWLLAGAGVIWMV
TLGAGLAAESRWARKMGFFDMGCEVQWARKSFLENFREHHAGDGEVLIRG
VMVDGERCVMVVHANNGEESFISSPSTTP*
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