Gcaud2513.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2513.t1
Unique Name	Gcaud2513.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_441_length_25217_cov_4.561570	contig	NODE_441_length_25217_cov_4.561570:23596..24585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2513	Gcaud2513	Gracilaria caudata M_176_S67 male	gene	NODE_441_length_25217_cov_4.561570 23596..24585 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2513.t1.start1	Gcaud2513.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_441_length_25217_cov_4.561570 23596..23598 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2513.t1.CDS1	Gcaud2513.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_441_length_25217_cov_4.561570 23596..24585 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2513.t1.exon1	Gcaud2513.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_441_length_25217_cov_4.561570 23596..24585 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2513.t1.stop1	Gcaud2513.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_441_length_25217_cov_4.561570 24583..24585 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2513.t1	Gcaud2513.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_441_length_25217_cov_4.561570 23596..24585 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+
coding sequence from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+

mRNA sequence

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp
MSQNRALSIRSQKKRLTAIAWGSLAIFVMLETVLSAFSDPVTIAQDTVED
CARLVATPHATQTLTAGELGDEARILCKKIDLERGFLVKEHGANISTTIR
NIQNTERAVRCEEQELYGYFRGQQVNRDVRNHTAACVGGTCVYVIVDGED
VYLSARPTHEERSLEADKTWFAFLKTRVRFKIPNEYKRQMTMRLARAMER
GERDEERLRALTLLGVRTDRCVRPDDEIGGRDGTEVAAWLLAGAGVIWMV
TLGAGLAAESRWARKMGFFDMGCEVQWARKSFLENFREHHAGDGEVLIRG
VMVDGERCVMVVHANNGEESFISSPSTTP*

spliced messenger RNA

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=990bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAAAACAGGGCCTTATCCATTCGCTCTCAGAAAAAACGACTAAC
GGCAATTGCATGGGGCTCGTTAGCGATATTCGTGATGTTGGAAACGGTGC
TATCGGCTTTCAGTGACCCCGTGACAATTGCACAAGACACCGTGGAAGAC
TGCGCGCGACTTGTTGCGACGCCACATGCCACCCAGACGTTAACTGCAGG
AGAACTGGGTGACGAAGCACGCATACTTTGCAAGAAGATAGACTTGGAGC
GCGGATTTCTTGTGAAAGAACACGGTGCGAACATCAGTACTACTATTAGA
AATATACAGAATACGGAACGCGCTGTTCGTTGTGAGGAACAAGAACTGTA
TGGATACTTTCGAGGCCAGCAGGTGAACCGCGATGTGCGAAACCACACAG
CGGCATGCGTGGGCGGGACGTGTGTATATGTGATTGTGGATGGGGAGGAT
GTATACCTTTCTGCGCGCCCCACGCACGAAGAGCGTAGTTTGGAGGCGGA
CAAGACTTGGTTCGCATTTCTGAAGACACGAGTGCGGTTCAAAATCCCTA
ATGAGTACAAGCGACAAATGACGATGCGGCTGGCACGAGCAATGGAGCGT
GGGGAGCGTGACGAAGAACGGCTGCGCGCCCTCACGCTTCTAGGAGTAAG
GACAGATCGATGTGTGCGCCCGGACGATGAGATTGGGGGACGGGATGGCA
CGGAGGTTGCTGCATGGTTATTGGCGGGGGCAGGCGTGATTTGGATGGTC
ACACTGGGGGCGGGTTTGGCAGCTGAGAGCCGATGGGCGCGAAAGATGGG
CTTCTTCGATATGGGATGCGAGGTGCAGTGGGCGCGGAAGAGTTTTCTCG
AAAACTTTCGAGAACATCATGCGGGGGACGGCGAAGTTCTGATACGCGGG
GTGATGGTAGACGGAGAACGGTGCGTTATGGTGGTGCACGCCAATAATGG
AGAAGAATCATTCATCTCGTCTCCTTCTACTACACCGTGA

protein sequence of Gcaud2513.t1

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=330bp
MSQNRALSIRSQKKRLTAIAWGSLAIFVMLETVLSAFSDPVTIAQDTVED
CARLVATPHATQTLTAGELGDEARILCKKIDLERGFLVKEHGANISTTIR
NIQNTERAVRCEEQELYGYFRGQQVNRDVRNHTAACVGGTCVYVIVDGED
VYLSARPTHEERSLEADKTWFAFLKTRVRFKIPNEYKRQMTMRLARAMER
GERDEERLRALTLLGVRTDRCVRPDDEIGGRDGTEVAAWLLAGAGVIWMV
TLGAGLAAESRWARKMGFFDMGCEVQWARKSFLENFREHHAGDGEVLIRG
VMVDGERCVMVVHANNGEESFISSPSTTP*

mRNA from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=990bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+ (Gracilaria caudata M_176_S67 male)
ATGAGCCAAAACAGGGCCTTATCCATTCGCTCTCAGAAAAAACGACTAAC
GGCAATTGCATGGGGCTCGTTAGCGATATTCGTGATGTTGGAAACGGTGC
TATCGGCTTTCAGTGACCCCGTGACAATTGCACAAGACACCGTGGAAGAC
TGCGCGCGACTTGTTGCGACGCCACATGCCACCCAGACGTTAACTGCAGG
AGAACTGGGTGACGAAGCACGCATACTTTGCAAGAAGATAGACTTGGAGC
GCGGATTTCTTGTGAAAGAACACGGTGCGAACATCAGTACTACTATTAGA
AATATACAGAATACGGAACGCGCTGTTCGTTGTGAGGAACAAGAACTGTA
TGGATACTTTCGAGGCCAGCAGGTGAACCGCGATGTGCGAAACCACACAG
CGGCATGCGTGGGCGGGACGTGTGTATATGTGATTGTGGATGGGGAGGAT
GTATACCTTTCTGCGCGCCCCACGCACGAAGAGCGTAGTTTGGAGGCGGA
CAAGACTTGGTTCGCATTTCTGAAGACACGAGTGCGGTTCAAAATCCCTA
ATGAGTACAAGCGACAAATGACGATGCGGCTGGCACGAGCAATGGAGCGT
GGGGAGCGTGACGAAGAACGGCTGCGCGCCCTCACGCTTCTAGGAGTAAG
GACAGATCGATGTGTGCGCCCGGACGATGAGATTGGGGGACGGGATGGCA
CGGAGGTTGCTGCATGGTTATTGGCGGGGGCAGGCGTGATTTGGATGGTC
ACACTGGGGGCGGGTTTGGCAGCTGAGAGCCGATGGGCGCGAAAGATGGG
CTTCTTCGATATGGGATGCGAGGTGCAGTGGGCGCGGAAGAGTTTTCTCG
AAAACTTTCGAGAACATCATGCGGGGGACGGCGAAGTTCTGATACGCGGG
GTGATGGTAGACGGAGAACGGTGCGTTATGGTGGTGCACGCCAATAATGG
AGAAGAATCATTCATCTCGTCTCCTTCTACTACACCGTGA

Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+

>Gcaud2513.t1 ID=Gcaud2513.t1|Name=Gcaud2513.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=990bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:23596..24585+ (Gracilaria caudata M_176_S67 male)
ATGAGCCAAAACAGGGCCTTATCCATTCGCTCTCAGAAAAAACGACTAAC
GGCAATTGCATGGGGCTCGTTAGCGATATTCGTGATGTTGGAAACGGTGC
TATCGGCTTTCAGTGACCCCGTGACAATTGCACAAGACACCGTGGAAGAC
TGCGCGCGACTTGTTGCGACGCCACATGCCACCCAGACGTTAACTGCAGG
AGAACTGGGTGACGAAGCACGCATACTTTGCAAGAAGATAGACTTGGAGC
GCGGATTTCTTGTGAAAGAACACGGTGCGAACATCAGTACTACTATTAGA
AATATACAGAATACGGAACGCGCTGTTCGTTGTGAGGAACAAGAACTGTA
TGGATACTTTCGAGGCCAGCAGGTGAACCGCGATGTGCGAAACCACACAG
CGGCATGCGTGGGCGGGACGTGTGTATATGTGATTGTGGATGGGGAGGAT
GTATACCTTTCTGCGCGCCCCACGCACGAAGAGCGTAGTTTGGAGGCGGA
CAAGACTTGGTTCGCATTTCTGAAGACACGAGTGCGGTTCAAAATCCCTA
ATGAGTACAAGCGACAAATGACGATGCGGCTGGCACGAGCAATGGAGCGT
GGGGAGCGTGACGAAGAACGGCTGCGCGCCCTCACGCTTCTAGGAGTAAG
GACAGATCGATGTGTGCGCCCGGACGATGAGATTGGGGGACGGGATGGCA
CGGAGGTTGCTGCATGGTTATTGGCGGGGGCAGGCGTGATTTGGATGGTC
ACACTGGGGGCGGGTTTGGCAGCTGAGAGCCGATGGGCGCGAAAGATGGG
CTTCTTCGATATGGGATGCGAGGTGCAGTGGGCGCGGAAGAGTTTTCTCG
AAAACTTTCGAGAACATCATGCGGGGGACGGCGAAGTTCTGATACGCGGG
GTGATGGTAGACGGAGAACGGTGCGTTATGGTGGTGCACGCCAATAATGG
AGAAGAATCATTCATCTCGTCTCCTTCTACTACACCGTGA