Gcaud2485.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2485.t1
Unique NameGcaud2485.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length492
Homology
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BLAST of Gcaud2485.t1 vs. uniprot
Match: A0A2V3II21_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II21_9FLOR)

HSP 1 Score: 129 bits (324), Expect = 4.760e-29
Identity = 120/453 (26.49%), Postives = 196/453 (43.27%), Query Frame = 0 
Query:   46 GNHIRVSTPSYPLWSEGLFSRPRIHALIFLIRMVCIVIPVYLETRLQFFERTVEVTTQLRNSFVIKPK-DDVPFEIDRTFSSLNDVL---EVIDTCSYIDENGWIIASMANVTYTPDQHLDGVLCVRGTAVSTFRIKQFRPAADIHLPHENDLNVSLTY---------------------PERLIYDDE--RLKKTVVEARVRNAKDVECFIGNTI---GDISNDGNDFW-----SLFCHKLNDSWIDYFHVEPPVTYKPPQFAPSKSGTTVVDSENRALYIALPETSQIPLRFLARAEFKKGVLMSAKHL----FSTPSALFARDMEEMRREFGFNLYSNAQNVSVRIPRDADGQHTIVDDQTLIICAMEIGFIFASGITMTLL--FRWKKIAAPNTLDDISQNWASFISH---GSRTAETDHIKLSLTSEICQDVVREVY--VPTNSNESC 452
            G  IRV +  YPLW+EGLF R   H L+FLIR+ CIVIPVYLETR       + V   +RN++V +P   DV           N VL   EV   C+  D++GW+IA +ANVT       D + CV+GT  + +R  +  P         ND +   T+                     P   + DD+  R    V    V + KD +CF        G   +  +  +     S  C  +  +++D++       +   Q   ++S T +++       ++          F+   E+K  ++++A HL    F  P     + +  +R      LYS A NV+V +P D   +   +D   +++ AME+  +   G+T+ ++  ++W  +   NT++ +S  WA   S       + +   I L L   IC    R +Y  V  +++E C
Sbjct:    2 GKSIRVRSIPYPLWNEGLFHRQPSHLLLFLIRIACIVIPVYLETRFISHSNPIPVKKLIRNAYVSQPNYHDVHPLWSEQRDPRNVVLLPEEVFHRCAARDDDGWVIAKIANVTLVGKDR-DLIHCVKGTEQAVYRTVEKTPHFVESSVVVNDQSKEKTFVYQPNLTLEVWRDEGPFKRFSPWPSVEDDDPNRQYLQVKNVTVLDTKDFQCFFWRAPVAEGHAFDREDRIYEYVLDSFVCQNVTGNFVDFY-------FTSVQDLANESNTRILEQGGNL--VSKQSIVSTTFEFIGSLEYKNEIIINAGHLSRHQFRFPPTTRFQFLLMIRAI----LYSRASNVTVEVPGDEKTRSVELDVVVIVVGAMEVIVVLVLGLTLAVISRYKWDDMQRANTVEGLSHIWAMTQSRTWWDLSSKKNGPISLRLKRYICDGKERFMYDAVQPDASEDC 440
The following BLAST results are available for this feature:
BLAST of Gcaud2485.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3II21_9FLOR4.760e-2926.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..369
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 393..491
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 370..392
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..87
NoneNo IPR availableTMHMMTMhelixcoord: 370..392
NoneNo IPR availableTMHMMTMhelixcoord: 69..87
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1505_length_10130_cov_4.819006contigNODE_1505_length_10130_cov_4.819006:2216..3691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2485.t1Gcaud2485.t1Gracilaria caudata M_176_S67 malemRNANODE_1505_length_10130_cov_4.819006 2216..3691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=492bp
MIELPFGNGVTTALIFFVFELILLPILMDSTTKAASFFVHQHARKGNHIR
VSTPSYPLWSEGLFSRPRIHALIFLIRMVCIVIPVYLETRLQFFERTVEV
TTQLRNSFVIKPKDDVPFEIDRTFSSLNDVLEVIDTCSYIDENGWIIASM
ANVTYTPDQHLDGVLCVRGTAVSTFRIKQFRPAADIHLPHENDLNVSLTY
PERLIYDDERLKKTVVEARVRNAKDVECFIGNTIGDISNDGNDFWSLFCH
KLNDSWIDYFHVEPPVTYKPPQFAPSKSGTTVVDSENRALYIALPETSQI
PLRFLARAEFKKGVLMSAKHLFSTPSALFARDMEEMRREFGFNLYSNAQN
VSVRIPRDADGQHTIVDDQTLIICAMEIGFIFASGITMTLLFRWKKIAAP
NTLDDISQNWASFISHGSRTAETDHIKLSLTSEICQDVVREVYVPTNSNE
SCSSEMSLSNPGGPRRARWLTSALKCPKFLKKKSAHEDSGN*
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