Gcaud2485.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2485.t1
Unique Name	Gcaud2485.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	492

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1505_length_10130_cov_4.819006	contig	NODE_1505_length_10130_cov_4.819006:2216..3691 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2485	Gcaud2485	Gracilaria caudata M_176_S67 male	gene	NODE_1505_length_10130_cov_4.819006 2216..3691 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2485.t1.stop1	Gcaud2485.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1505_length_10130_cov_4.819006 2216..2218 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2485.t1.CDS1	Gcaud2485.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1505_length_10130_cov_4.819006 2216..3691 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2485.t1.exon1	Gcaud2485.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1505_length_10130_cov_4.819006 2216..3691 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2485.t1.start1	Gcaud2485.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1505_length_10130_cov_4.819006 3689..3691 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2485.t1	Gcaud2485.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1505_length_10130_cov_4.819006 2216..3691 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691-
coding sequence from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691-

mRNA sequence

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp
MIELPFGNGVTTALIFFVFELILLPILMDSTTKAASFFVHQHARKGNHIR
VSTPSYPLWSEGLFSRPRIHALIFLIRMVCIVIPVYLETRLQFFERTVEV
TTQLRNSFVIKPKDDVPFEIDRTFSSLNDVLEVIDTCSYIDENGWIIASM
ANVTYTPDQHLDGVLCVRGTAVSTFRIKQFRPAADIHLPHENDLNVSLTY
PERLIYDDERLKKTVVEARVRNAKDVECFIGNTIGDISNDGNDFWSLFCH
KLNDSWIDYFHVEPPVTYKPPQFAPSKSGTTVVDSENRALYIALPETSQI
PLRFLARAEFKKGVLMSAKHLFSTPSALFARDMEEMRREFGFNLYSNAQN
VSVRIPRDADGQHTIVDDQTLIICAMEIGFIFASGITMTLLFRWKKIAAP
NTLDDISQNWASFISHGSRTAETDHIKLSLTSEICQDVVREVYVPTNSNE
SCSSEMSLSNPGGPRRARWLTSALKCPKFLKKKSAHEDSGN*

spliced messenger RNA

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGTTACCGTTTGGGAATGGAGTGACTACAGCCTTGATCTTTTT
CGTCTTTGAGCTCATTCTACTCCCTATTTTGATGGACTCTACCACCAAAG
CTGCGTCATTCTTTGTGCATCAACACGCAAGAAAGGGAAACCACATACGG
GTCAGCACGCCGTCATACCCACTCTGGAGTGAAGGCCTTTTCAGTCGTCC
ACGTATTCATGCATTGATCTTTCTCATACGCATGGTATGCATTGTCATTC
CGGTTTACCTGGAGACGAGGTTGCAATTTTTCGAGCGCACCGTCGAGGTC
ACAACCCAGTTACGCAACTCCTTCGTCATCAAACCAAAAGATGATGTGCC
GTTCGAAATTGATAGGACATTCTCTTCACTCAATGATGTCCTTGAAGTTA
TCGATACTTGTTCTTACATCGATGAAAACGGATGGATCATTGCTTCTATG
GCAAATGTGACATATACCCCTGACCAGCATTTAGATGGAGTGCTTTGCGT
GAGAGGCACGGCAGTGTCCACTTTTCGAATCAAACAATTTCGTCCGGCTG
CAGACATCCATCTACCACATGAGAACGACCTGAACGTCTCCTTAACATAT
CCAGAAAGGCTTATATACGATGATGAGCGATTGAAAAAAACAGTTGTTGA
AGCACGTGTGAGAAACGCCAAGGACGTCGAGTGTTTCATAGGCAATACAA
TTGGTGACATCTCCAATGACGGAAATGATTTTTGGTCTCTCTTCTGTCAT
AAACTGAATGACTCTTGGATTGACTATTTCCACGTAGAGCCACCCGTGAC
ATATAAACCGCCTCAGTTCGCTCCATCGAAAAGTGGTACAACTGTAGTCG
ACTCGGAAAATCGTGCGTTGTACATTGCTCTTCCGGAAACATCGCAAATT
CCTCTGCGCTTCCTTGCTCGTGCGGAATTTAAGAAAGGAGTGTTAATGTC
CGCGAAACATCTATTCAGTACCCCATCTGCATTGTTTGCGCGCGACATGG
AAGAGATGCGTCGCGAATTTGGGTTCAATTTATATTCAAACGCTCAAAAT
GTATCGGTGCGAATTCCCAGAGATGCAGATGGACAGCATACCATTGTGGA
TGATCAAACACTAATCATTTGTGCAATGGAAATTGGTTTTATCTTTGCCT
CCGGAATTACGATGACGCTTTTGTTCCGGTGGAAAAAGATTGCAGCTCCC
AACACCTTGGATGATATCTCTCAGAACTGGGCCAGCTTCATCTCTCATGG
AAGCAGAACAGCAGAGACCGATCATATCAAGCTGAGTCTGACCAGTGAGA
TATGCCAAGACGTTGTTCGCGAGGTCTATGTACCAACAAATTCAAATGAA
AGTTGCTCCTCCGAGATGTCTCTCTCCAACCCGGGCGGGCCGAGAAGGGC
ACGATGGCTGACTTCAGCCCTGAAGTGCCCAAAATTTTTGAAGAAGAAAT
CTGCGCACGAAGATAGTGGTAATTGA

protein sequence of Gcaud2485.t1

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=492bp
MIELPFGNGVTTALIFFVFELILLPILMDSTTKAASFFVHQHARKGNHIR
VSTPSYPLWSEGLFSRPRIHALIFLIRMVCIVIPVYLETRLQFFERTVEV
TTQLRNSFVIKPKDDVPFEIDRTFSSLNDVLEVIDTCSYIDENGWIIASM
ANVTYTPDQHLDGVLCVRGTAVSTFRIKQFRPAADIHLPHENDLNVSLTY
PERLIYDDERLKKTVVEARVRNAKDVECFIGNTIGDISNDGNDFWSLFCH
KLNDSWIDYFHVEPPVTYKPPQFAPSKSGTTVVDSENRALYIALPETSQI
PLRFLARAEFKKGVLMSAKHLFSTPSALFARDMEEMRREFGFNLYSNAQN
VSVRIPRDADGQHTIVDDQTLIICAMEIGFIFASGITMTLLFRWKKIAAP
NTLDDISQNWASFISHGSRTAETDHIKLSLTSEICQDVVREVYVPTNSNE
SCSSEMSLSNPGGPRRARWLTSALKCPKFLKKKSAHEDSGN*

mRNA from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691- (Gracilaria caudata M_176_S67 male)
ATGATCGAGTTACCGTTTGGGAATGGAGTGACTACAGCCTTGATCTTTTT
CGTCTTTGAGCTCATTCTACTCCCTATTTTGATGGACTCTACCACCAAAG
CTGCGTCATTCTTTGTGCATCAACACGCAAGAAAGGGAAACCACATACGG
GTCAGCACGCCGTCATACCCACTCTGGAGTGAAGGCCTTTTCAGTCGTCC
ACGTATTCATGCATTGATCTTTCTCATACGCATGGTATGCATTGTCATTC
CGGTTTACCTGGAGACGAGGTTGCAATTTTTCGAGCGCACCGTCGAGGTC
ACAACCCAGTTACGCAACTCCTTCGTCATCAAACCAAAAGATGATGTGCC
GTTCGAAATTGATAGGACATTCTCTTCACTCAATGATGTCCTTGAAGTTA
TCGATACTTGTTCTTACATCGATGAAAACGGATGGATCATTGCTTCTATG
GCAAATGTGACATATACCCCTGACCAGCATTTAGATGGAGTGCTTTGCGT
GAGAGGCACGGCAGTGTCCACTTTTCGAATCAAACAATTTCGTCCGGCTG
CAGACATCCATCTACCACATGAGAACGACCTGAACGTCTCCTTAACATAT
CCAGAAAGGCTTATATACGATGATGAGCGATTGAAAAAAACAGTTGTTGA
AGCACGTGTGAGAAACGCCAAGGACGTCGAGTGTTTCATAGGCAATACAA
TTGGTGACATCTCCAATGACGGAAATGATTTTTGGTCTCTCTTCTGTCAT
AAACTGAATGACTCTTGGATTGACTATTTCCACGTAGAGCCACCCGTGAC
ATATAAACCGCCTCAGTTCGCTCCATCGAAAAGTGGTACAACTGTAGTCG
ACTCGGAAAATCGTGCGTTGTACATTGCTCTTCCGGAAACATCGCAAATT
CCTCTGCGCTTCCTTGCTCGTGCGGAATTTAAGAAAGGAGTGTTAATGTC
CGCGAAACATCTATTCAGTACCCCATCTGCATTGTTTGCGCGCGACATGG
AAGAGATGCGTCGCGAATTTGGGTTCAATTTATATTCAAACGCTCAAAAT
GTATCGGTGCGAATTCCCAGAGATGCAGATGGACAGCATACCATTGTGGA
TGATCAAACACTAATCATTTGTGCAATGGAAATTGGTTTTATCTTTGCCT
CCGGAATTACGATGACGCTTTTGTTCCGGTGGAAAAAGATTGCAGCTCCC
AACACCTTGGATGATATCTCTCAGAACTGGGCCAGCTTCATCTCTCATGG
AAGCAGAACAGCAGAGACCGATCATATCAAGCTGAGTCTGACCAGTGAGA
TATGCCAAGACGTTGTTCGCGAGGTCTATGTACCAACAAATTCAAATGAA
AGTTGCTCCTCCGAGATGTCTCTCTCCAACCCGGGCGGGCCGAGAAGGGC
ACGATGGCTGACTTCAGCCCTGAAGTGCCCAAAATTTTTGAAGAAGAAAT
CTGCGCACGAAGATAGTGGTAATTGA

Coding sequence (CDS) from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691-

>Gcaud2485.t1 ID=Gcaud2485.t1|Name=Gcaud2485.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1476bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:2216..3691- (Gracilaria caudata M_176_S67 male)
ATGATCGAGTTACCGTTTGGGAATGGAGTGACTACAGCCTTGATCTTTTT
CGTCTTTGAGCTCATTCTACTCCCTATTTTGATGGACTCTACCACCAAAG
CTGCGTCATTCTTTGTGCATCAACACGCAAGAAAGGGAAACCACATACGG
GTCAGCACGCCGTCATACCCACTCTGGAGTGAAGGCCTTTTCAGTCGTCC
ACGTATTCATGCATTGATCTTTCTCATACGCATGGTATGCATTGTCATTC
CGGTTTACCTGGAGACGAGGTTGCAATTTTTCGAGCGCACCGTCGAGGTC
ACAACCCAGTTACGCAACTCCTTCGTCATCAAACCAAAAGATGATGTGCC
GTTCGAAATTGATAGGACATTCTCTTCACTCAATGATGTCCTTGAAGTTA
TCGATACTTGTTCTTACATCGATGAAAACGGATGGATCATTGCTTCTATG
GCAAATGTGACATATACCCCTGACCAGCATTTAGATGGAGTGCTTTGCGT
GAGAGGCACGGCAGTGTCCACTTTTCGAATCAAACAATTTCGTCCGGCTG
CAGACATCCATCTACCACATGAGAACGACCTGAACGTCTCCTTAACATAT
CCAGAAAGGCTTATATACGATGATGAGCGATTGAAAAAAACAGTTGTTGA
AGCACGTGTGAGAAACGCCAAGGACGTCGAGTGTTTCATAGGCAATACAA
TTGGTGACATCTCCAATGACGGAAATGATTTTTGGTCTCTCTTCTGTCAT
AAACTGAATGACTCTTGGATTGACTATTTCCACGTAGAGCCACCCGTGAC
ATATAAACCGCCTCAGTTCGCTCCATCGAAAAGTGGTACAACTGTAGTCG
ACTCGGAAAATCGTGCGTTGTACATTGCTCTTCCGGAAACATCGCAAATT
CCTCTGCGCTTCCTTGCTCGTGCGGAATTTAAGAAAGGAGTGTTAATGTC
CGCGAAACATCTATTCAGTACCCCATCTGCATTGTTTGCGCGCGACATGG
AAGAGATGCGTCGCGAATTTGGGTTCAATTTATATTCAAACGCTCAAAAT
GTATCGGTGCGAATTCCCAGAGATGCAGATGGACAGCATACCATTGTGGA
TGATCAAACACTAATCATTTGTGCAATGGAAATTGGTTTTATCTTTGCCT
CCGGAATTACGATGACGCTTTTGTTCCGGTGGAAAAAGATTGCAGCTCCC
AACACCTTGGATGATATCTCTCAGAACTGGGCCAGCTTCATCTCTCATGG
AAGCAGAACAGCAGAGACCGATCATATCAAGCTGAGTCTGACCAGTGAGA
TATGCCAAGACGTTGTTCGCGAGGTCTATGTACCAACAAATTCAAATGAA
AGTTGCTCCTCCGAGATGTCTCTCTCCAACCCGGGCGGGCCGAGAAGGGC
ACGATGGCTGACTTCAGCCCTGAAGTGCCCAAAATTTTTGAAGAAGAAAT
CTGCGCACGAAGATAGTGGTAATTGA