Gcaud2484.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2484.t1
Unique NameGcaud2484.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length478
Homology
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BLAST of Gcaud2484.t1 vs. uniprot
Match: A0A2V3II28_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II28_9FLOR)

HSP 1 Score: 221 bits (563), Expect = 6.890e-63
Identity = 158/481 (32.85%), Postives = 240/481 (49.90%), Query Frame = 0 
Query:    1 MLEIPFSTGVVAAFLFLVYEIVVFPVLSYSTCALAAILIYPYARKGNQVLVQSIKFPFWSEGILRHQWSHLLLLGIRVVFVAIPVLLGAALESRPAP--VPTTFRHAFFPVPKENWHSYETQLSHNVGDLRKDAEDVYRRCTWVDEYGWRRTSSANVSYGTNGRLLQVHCIESTEKKMFRRAGITDA-IRNPTEHRQQIDLNISWIEGPKTAFPEVSLLVPEISLAHEENTTAMQIISITTMSAINMTCYTFPGAVEIGIGFDTALGYATGNLR--CQRTRGLTVDYY-MSESCDIL--------SEFTGSNDRSSLVLKRSGIVSCWFAYIESLEFEDKIRITAEHVAGSALLRPYVGESLYENVILQRRREFHSDLTKLLYTRVDNFT-LELPSNTESRTVIGYKWVIIATVHVCVVVCFGLIMFFYVRYSRQHGKVIQMPNTVNGISEIWSVATPISEHNDTPRRARITLKIRDIESE 466
            M+ +PFS+GVV+A LFL +EI+VFP+L YST  LA++ +Y  ARKGN V++  +KFP WSEG+ RHQ SH  LL IR+V +AIPV L   LESR  P  V  T  HAF P P ++W++Y+ +   ++  LR+   + +  CT VDE GW     AN +Y       Q+ C+ +TE+ ++    +T+A ++    + Q + +++SW EG    FP+  +L            TA ++ +   ++   + CY FP  V       +  G+     R  CQ+   + V +Y +  + D L        +   G    S  +  R+        Y  S +F+DK+ + A+H+A      P    SL  + I Q           +LY++  N T L L   T  RT I  + +IIA   + VV+ F L M    R S+     IQ PNTV+G+S  W+ +     H  T     I L++R   SE
Sbjct:    1 MVVVPFSSGVVSALLFLAFEIIVFPLLFYSTSILASLFLYRNARKGNDVVIDKMKFPLWSEGLSRHQTSHYSLLAIRIVLIAIPVYLETTLESREEPEMVSRTVTHAFVPQPTDDWYTYQIRSGEHIDSLRRTGLNTFLACTSVDEKGWVWAKVANFTYIQEHDAHQIRCVSNTEQPIY---SLTEATVKYGPGNVQLLKMSVSWTEGRVADFPQALVLKDRFGREAPPGETAFRVHNAVALNDTAVKCY-FPQTVRTRFS-KSRNGHPHTAWRGWCQKEEPIGVAFYSLLVNMDQLPMHNLSYETRERGRCGSSCKLRSRNATTVLEIVYRGSFQFKDKVLLGAKHLANYI---PDYDSSLRASDIAQC----------ILYSKASNVTVLTLSGRTLPRTEIEGRAIIIAISEIVVVLLFAL-MLSCARLSKWGH--IQQPNTVSGLSNCWAESQKALSHQRTKEGKWIKLRLRRTGSE 460
The following BLAST results are available for this feature:
BLAST of Gcaud2484.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3II28_9FLOR6.890e-6332.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..91
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 393..415
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..392
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 416..477
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 393..415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1505_length_10130_cov_4.819006contigNODE_1505_length_10130_cov_4.819006:417..1850 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2484.t1Gcaud2484.t1Gracilaria caudata M_176_S67 malemRNANODE_1505_length_10130_cov_4.819006 417..1850 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=478bp
MLEIPFSTGVVAAFLFLVYEIVVFPVLSYSTCALAAILIYPYARKGNQVL
VQSIKFPFWSEGILRHQWSHLLLLGIRVVFVAIPVLLGAALESRPAPVPT
TFRHAFFPVPKENWHSYETQLSHNVGDLRKDAEDVYRRCTWVDEYGWRRT
SSANVSYGTNGRLLQVHCIESTEKKMFRRAGITDAIRNPTEHRQQIDLNI
SWIEGPKTAFPEVSLLVPEISLAHEENTTAMQIISITTMSAINMTCYTFP
GAVEIGIGFDTALGYATGNLRCQRTRGLTVDYYMSESCDILSEFTGSNDR
SSLVLKRSGIVSCWFAYIESLEFEDKIRITAEHVAGSALLRPYVGESLYE
NVILQRRREFHSDLTKLLYTRVDNFTLELPSNTESRTVIGYKWVIIATVH
VCVVVCFGLIMFFYVRYSRQHGKVIQMPNTVNGISEIWSVATPISEHNDT
PRRARITLKIRDIESEEHTEYIPTGGF*
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