Gcaud2484.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2484.t1
Unique Name	Gcaud2484.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1505_length_10130_cov_4.819006	contig	NODE_1505_length_10130_cov_4.819006:417..1850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2484	Gcaud2484	Gracilaria caudata M_176_S67 male	gene	NODE_1505_length_10130_cov_4.819006 417..1850 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2484.t1.start1	Gcaud2484.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1505_length_10130_cov_4.819006 417..419 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2484.t1.CDS1	Gcaud2484.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1505_length_10130_cov_4.819006 417..1850 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2484.t1.exon1	Gcaud2484.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1505_length_10130_cov_4.819006 417..1850 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2484.t1.stop1	Gcaud2484.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1505_length_10130_cov_4.819006 1848..1850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2484.t1	Gcaud2484.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1505_length_10130_cov_4.819006 417..1850 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+
coding sequence from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+

mRNA sequence

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=478bp
MLEIPFSTGVVAAFLFLVYEIVVFPVLSYSTCALAAILIYPYARKGNQVL
VQSIKFPFWSEGILRHQWSHLLLLGIRVVFVAIPVLLGAALESRPAPVPT
TFRHAFFPVPKENWHSYETQLSHNVGDLRKDAEDVYRRCTWVDEYGWRRT
SSANVSYGTNGRLLQVHCIESTEKKMFRRAGITDAIRNPTEHRQQIDLNI
SWIEGPKTAFPEVSLLVPEISLAHEENTTAMQIISITTMSAINMTCYTFP
GAVEIGIGFDTALGYATGNLRCQRTRGLTVDYYMSESCDILSEFTGSNDR
SSLVLKRSGIVSCWFAYIESLEFEDKIRITAEHVAGSALLRPYVGESLYE
NVILQRRREFHSDLTKLLYTRVDNFTLELPSNTESRTVIGYKWVIIATVH
VCVVVCFGLIMFFYVRYSRQHGKVIQMPNTVNGISEIWSVATPISEHNDT
PRRARITLKIRDIESEEHTEYIPTGGF*

spliced messenger RNA

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGAGATACCGTTCAGCACTGGCGTTGTCGCTGCCTTCCTCTTTCT
CGTATATGAAATCGTCGTTTTCCCCGTTCTCAGTTACTCTACTTGTGCGC
TTGCCGCCATCCTCATTTACCCATACGCCAGAAAGGGTAATCAAGTGCTC
GTGCAGAGCATCAAATTTCCTTTTTGGAGTGAGGGCATCCTGCGCCACCA
ATGGTCACATTTGCTCCTCCTCGGTATTCGAGTGGTATTCGTGGCCATTC
CAGTTCTTTTGGGTGCTGCGCTTGAGTCCCGACCAGCTCCAGTGCCTACC
ACCTTTCGGCACGCATTTTTCCCGGTACCGAAGGAGAACTGGCATTCTTA
TGAAACTCAATTAAGCCACAATGTCGGGGATCTTCGGAAGGACGCTGAAG
ATGTGTATCGCCGATGCACATGGGTAGACGAGTATGGTTGGCGAAGAACA
TCTTCGGCTAATGTCTCGTACGGAACCAATGGTCGGCTGCTGCAAGTGCA
CTGCATCGAAAGCACGGAGAAAAAAATGTTCCGAAGGGCTGGCATCACAG
ATGCCATACGGAATCCTACCGAACACCGCCAACAAATCGATTTGAACATT
TCATGGATCGAAGGCCCGAAAACAGCATTTCCTGAAGTCTCTTTATTAGT
TCCTGAAATCTCTTTAGCGCATGAGGAGAATACGACGGCGATGCAAATAA
TAAGTATCACAACGATGAGTGCTATCAATATGACGTGCTACACTTTTCCT
GGAGCCGTTGAAATCGGTATCGGTTTTGATACTGCGCTAGGTTACGCAAC
GGGGAACCTTCGGTGTCAGAGGACGAGAGGACTTACTGTGGACTACTACA
TGTCTGAATCATGTGACATTCTATCAGAGTTCACTGGGAGCAACGACAGG
TCAAGCTTGGTATTAAAACGAAGTGGCATTGTCAGCTGTTGGTTTGCTTA
TATAGAAAGCTTAGAGTTCGAAGACAAGATACGGATCACGGCAGAACACG
TTGCCGGCTCAGCATTGCTTCGTCCTTATGTAGGTGAATCTCTTTATGAG
AATGTTATACTTCAGCGCCGCAGGGAATTCCACTCCGACCTGACGAAGTT
GCTGTACACTCGAGTGGATAACTTTACTCTGGAATTACCAAGCAACACAG
AGAGTCGAACCGTAATAGGTTACAAGTGGGTCATCATTGCTACCGTTCAC
GTGTGCGTTGTAGTATGTTTCGGGCTCATTATGTTTTTTTACGTTCGGTA
CTCTCGGCAACACGGAAAAGTGATCCAGATGCCTAACACTGTGAACGGTA
TCTCCGAGATTTGGTCTGTTGCGACCCCCATCTCGGAACACAATGACACG
CCCCGCCGTGCACGTATCACGTTGAAAATACGCGATATAGAGAGCGAAGA
GCATACAGAGTATATCCCGACGGGAGGCTTTTAG

protein sequence of Gcaud2484.t1

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=478bp
MLEIPFSTGVVAAFLFLVYEIVVFPVLSYSTCALAAILIYPYARKGNQVL
VQSIKFPFWSEGILRHQWSHLLLLGIRVVFVAIPVLLGAALESRPAPVPT
TFRHAFFPVPKENWHSYETQLSHNVGDLRKDAEDVYRRCTWVDEYGWRRT
SSANVSYGTNGRLLQVHCIESTEKKMFRRAGITDAIRNPTEHRQQIDLNI
SWIEGPKTAFPEVSLLVPEISLAHEENTTAMQIISITTMSAINMTCYTFP
GAVEIGIGFDTALGYATGNLRCQRTRGLTVDYYMSESCDILSEFTGSNDR
SSLVLKRSGIVSCWFAYIESLEFEDKIRITAEHVAGSALLRPYVGESLYE
NVILQRRREFHSDLTKLLYTRVDNFTLELPSNTESRTVIGYKWVIIATVH
VCVVVCFGLIMFFYVRYSRQHGKVIQMPNTVNGISEIWSVATPISEHNDT
PRRARITLKIRDIESEEHTEYIPTGGF*

mRNA from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+ (Gracilaria caudata M_176_S67 male)
ATGCTGGAGATACCGTTCAGCACTGGCGTTGTCGCTGCCTTCCTCTTTCT
CGTATATGAAATCGTCGTTTTCCCCGTTCTCAGTTACTCTACTTGTGCGC
TTGCCGCCATCCTCATTTACCCATACGCCAGAAAGGGTAATCAAGTGCTC
GTGCAGAGCATCAAATTTCCTTTTTGGAGTGAGGGCATCCTGCGCCACCA
ATGGTCACATTTGCTCCTCCTCGGTATTCGAGTGGTATTCGTGGCCATTC
CAGTTCTTTTGGGTGCTGCGCTTGAGTCCCGACCAGCTCCAGTGCCTACC
ACCTTTCGGCACGCATTTTTCCCGGTACCGAAGGAGAACTGGCATTCTTA
TGAAACTCAATTAAGCCACAATGTCGGGGATCTTCGGAAGGACGCTGAAG
ATGTGTATCGCCGATGCACATGGGTAGACGAGTATGGTTGGCGAAGAACA
TCTTCGGCTAATGTCTCGTACGGAACCAATGGTCGGCTGCTGCAAGTGCA
CTGCATCGAAAGCACGGAGAAAAAAATGTTCCGAAGGGCTGGCATCACAG
ATGCCATACGGAATCCTACCGAACACCGCCAACAAATCGATTTGAACATT
TCATGGATCGAAGGCCCGAAAACAGCATTTCCTGAAGTCTCTTTATTAGT
TCCTGAAATCTCTTTAGCGCATGAGGAGAATACGACGGCGATGCAAATAA
TAAGTATCACAACGATGAGTGCTATCAATATGACGTGCTACACTTTTCCT
GGAGCCGTTGAAATCGGTATCGGTTTTGATACTGCGCTAGGTTACGCAAC
GGGGAACCTTCGGTGTCAGAGGACGAGAGGACTTACTGTGGACTACTACA
TGTCTGAATCATGTGACATTCTATCAGAGTTCACTGGGAGCAACGACAGG
TCAAGCTTGGTATTAAAACGAAGTGGCATTGTCAGCTGTTGGTTTGCTTA
TATAGAAAGCTTAGAGTTCGAAGACAAGATACGGATCACGGCAGAACACG
TTGCCGGCTCAGCATTGCTTCGTCCTTATGTAGGTGAATCTCTTTATGAG
AATGTTATACTTCAGCGCCGCAGGGAATTCCACTCCGACCTGACGAAGTT
GCTGTACACTCGAGTGGATAACTTTACTCTGGAATTACCAAGCAACACAG
AGAGTCGAACCGTAATAGGTTACAAGTGGGTCATCATTGCTACCGTTCAC
GTGTGCGTTGTAGTATGTTTCGGGCTCATTATGTTTTTTTACGTTCGGTA
CTCTCGGCAACACGGAAAAGTGATCCAGATGCCTAACACTGTGAACGGTA
TCTCCGAGATTTGGTCTGTTGCGACCCCCATCTCGGAACACAATGACACG
CCCCGCCGTGCACGTATCACGTTGAAAATACGCGATATAGAGAGCGAAGA
GCATACAGAGTATATCCCGACGGGAGGCTTTTAG

Coding sequence (CDS) from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+

>Gcaud2484.t1 ID=Gcaud2484.t1|Name=Gcaud2484.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1434bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:417..1850+ (Gracilaria caudata M_176_S67 male)
ATGCTGGAGATACCGTTCAGCACTGGCGTTGTCGCTGCCTTCCTCTTTCT
CGTATATGAAATCGTCGTTTTCCCCGTTCTCAGTTACTCTACTTGTGCGC
TTGCCGCCATCCTCATTTACCCATACGCCAGAAAGGGTAATCAAGTGCTC
GTGCAGAGCATCAAATTTCCTTTTTGGAGTGAGGGCATCCTGCGCCACCA
ATGGTCACATTTGCTCCTCCTCGGTATTCGAGTGGTATTCGTGGCCATTC
CAGTTCTTTTGGGTGCTGCGCTTGAGTCCCGACCAGCTCCAGTGCCTACC
ACCTTTCGGCACGCATTTTTCCCGGTACCGAAGGAGAACTGGCATTCTTA
TGAAACTCAATTAAGCCACAATGTCGGGGATCTTCGGAAGGACGCTGAAG
ATGTGTATCGCCGATGCACATGGGTAGACGAGTATGGTTGGCGAAGAACA
TCTTCGGCTAATGTCTCGTACGGAACCAATGGTCGGCTGCTGCAAGTGCA
CTGCATCGAAAGCACGGAGAAAAAAATGTTCCGAAGGGCTGGCATCACAG
ATGCCATACGGAATCCTACCGAACACCGCCAACAAATCGATTTGAACATT
TCATGGATCGAAGGCCCGAAAACAGCATTTCCTGAAGTCTCTTTATTAGT
TCCTGAAATCTCTTTAGCGCATGAGGAGAATACGACGGCGATGCAAATAA
TAAGTATCACAACGATGAGTGCTATCAATATGACGTGCTACACTTTTCCT
GGAGCCGTTGAAATCGGTATCGGTTTTGATACTGCGCTAGGTTACGCAAC
GGGGAACCTTCGGTGTCAGAGGACGAGAGGACTTACTGTGGACTACTACA
TGTCTGAATCATGTGACATTCTATCAGAGTTCACTGGGAGCAACGACAGG
TCAAGCTTGGTATTAAAACGAAGTGGCATTGTCAGCTGTTGGTTTGCTTA
TATAGAAAGCTTAGAGTTCGAAGACAAGATACGGATCACGGCAGAACACG
TTGCCGGCTCAGCATTGCTTCGTCCTTATGTAGGTGAATCTCTTTATGAG
AATGTTATACTTCAGCGCCGCAGGGAATTCCACTCCGACCTGACGAAGTT
GCTGTACACTCGAGTGGATAACTTTACTCTGGAATTACCAAGCAACACAG
AGAGTCGAACCGTAATAGGTTACAAGTGGGTCATCATTGCTACCGTTCAC
GTGTGCGTTGTAGTATGTTTCGGGCTCATTATGTTTTTTTACGTTCGGTA
CTCTCGGCAACACGGAAAAGTGATCCAGATGCCTAACACTGTGAACGGTA
TCTCCGAGATTTGGTCTGTTGCGACCCCCATCTCGGAACACAATGACACG
CCCCGCCGTGCACGTATCACGTTGAAAATACGCGATATAGAGAGCGAAGA
GCATACAGAGTATATCCCGACGGGAGGCTTTTAG