Gcaud2481.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2481.t1
Unique NameGcaud2481.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length531
Homology
BLAST of Gcaud2481.t1 vs. uniprot
Match: A0A2V3IN48_9FLOR (R3H domain-containing protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN48_9FLOR)

HSP 1 Score: 322 bits (824), Expect = 1.980e-100
Identity = 255/594 (42.93%), Postives = 296/594 (49.83%), Query Frame = 0
Query:    1 MSDSE---LSDAPDAWLWKVMQKHKNREMIALLEDTLTSFVHDSQQTSLRFPPRNAFHRRVCHAVARRYQLAHKLESIPNAHLSSSDALRLVLIKTSDSSVPARRLEHFAALPPPAQPQQPXXXXXXXXXXXXXXXAHVDNCHANTSTXXTSNPSQPPPSAATPARFLRRPTTANAKPARPRIPSVSSSLSSASAPALRSITEEDYRKARARIFKPSSSTAD----------------------------ISTATSSQQLPQKEQLEPQPSDLQQSQQQPFESQFQRIVKLNPSSIAKGPVQGSTGFERRRNRRKSSPESNHRAQPSQQPKPQSSNTTTPLSSIQSRQNPQHENSRTSXXXXXXXXXXXXXXXXXXXSVTNPHSTPAATRRQPTFSSEPNNVDLQDPDFDRRYDKWAVRHPAPQQPAPQPIPVPIFSQLLYPYAVQAPHH-VHPSNMHLPQASAAMQQPITQYQSIVHHPSNALMFHHPGRSGLEFESRVSAPANVSAGFASS-------------------------------RALDAGETVVATSQAFANHISASSIGAQVVQ-RASPAYGLDSTVDFPPLQ 530
            MSD +    S APD WLWKV+Q  +NREM A LEDTL  FVHD + TSLRFPPR+AFHRRVCHAVA R++L H+LE++P    S   AL LVL+KT  S VP  RL  FAA PPP     P      XXXXXXXXX            XX      P       ARFL+RP+ A  KP R  + S SSSLSSA+APAL+SITEEDYRKARARIFKP+ ST +                            I+   S+            PS       QP             SS+AKGP+ GSTGFERRRNRR+SS       Q +Q   PQS  T+TPL                                       N  +TP++    P    EP + DLQDPDFDRRY KWA+RHP P QP PQP+ +P+FSQLLYPY VQ PHH VHPSN+H+P            YQSIV HPSN L+FHH   +     +   A AN                                       R     E +V  SQ FA+ IS   IGA  V   A+PAYGLDSTVDFPPLQ
Sbjct:    1 MSDDDEARASCAPDLWLWKVLQNERNREMAAKLEDTLRHFVHDPRHTSLRFPPRSAFHRRVCHAVASRFRLDHRLEALP----SPPHALILVLLKTPSSRVPHTRLAQFAAAPPPPSASPPASFPAPXXXXXXXXXXXXXXXXXPAXXXXXXXXXAPA------ARFLKRPSNAALKPPRTSLLS-SSSLSSAAAPALKSITEEDYRKARARIFKPNPSTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXINNNNSTNNXXXXXXXXXXPS-------QPXXXXXXXXXXXXXSSVAKGPIAGSTGFERRRNRRQSS-------QSTQSATPQSVTTSTPL-------------------------------------FANSDTTPSSYAPLP----EPKHPDLQDPDFDRRYHKWALRHPTPHQPTPQPVALPVFSQLLYPYPVQTPHHHVHPSNIHMPXXXXXXXX-XAPYQSIVQHPSNTLLFHHVAHT---VRNHYDASANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLHPRTFGVSEPLVVRSQPFAHRISTQRIGATAVAPSATPAYGLDSTVDFPPLQ 524          
BLAST of Gcaud2481.t1 vs. uniprot
Match: M2XJQ9_GALSU (Nucleic acid binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJQ9_GALSU)

HSP 1 Score: 74.3 bits (181), Expect = 1.260e-10
Identity = 71/219 (32.42%), Postives = 100/219 (45.66%), Query Frame = 0
Query:   11 DAWLWKVMQKHKNREMIALLEDTLTSFVHDSQQTSLRFPPRNAFHRRVCHAVARRYQLAHKLESIPNAHLSSSDALRLVLIKTSDSSVPARRLEHFAALPPPAQPQQPXXXXXXXXXXXXXXXAHVDNCHANTSTXXTSNPSQPPPSAATPARFLRRPTTANAKPARPRIPSVSSSLSSASAPALRSITEEDYRKARARIFKPS-----SSTADISTAT 224
            D ++  V+Q +KNR+ +  LE+TL  FV +S+   L FPP+ AF RR+ H VA RY L + L +  N + ++SD  RLVL+KT  + +P   L  +                             V N    T T  T+  S+P         FL+R     A+    R  S    L +     +R +TEE+Y+KARARIF  S     S T  I T T
Sbjct:   11 DPFILSVLQNNKNRDTLKKLEETLNQFVKNSELRRLEFPPKTAFQRRIIHRVALRYGLDNLLLAAEN-NGTNSDKRRLVLLKTEQTKIPNVLLSDWE---------------------NSVAKREVANESRQTPTENTN--SKP--------FFLKRNVQQGAQRTFHRSSSCVG-LEAGIGNVIRGVTEEEYQKARARIFNNSVASHCSQTQQIGTKT 196          
The following BLAST results are available for this feature:
BLAST of Gcaud2481.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IN48_9FLOR1.980e-10042.93R3H domain-containing protein 2 n=1 Tax=Gracilario... [more]
M2XJQ9_GALSU1.260e-1032.42Nucleic acid binding protein n=1 Tax=Galdieria sul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036867R3H domain superfamilyGENE3D3.30.1370.50coord: 2..129
e-value: 4.4E-17
score: 63.9
IPR036867R3H domain superfamilySUPERFAMILY82708R3H domaincoord: 11..113
IPR001374R3H domainPFAMPF01424R3Hcoord: 27..71
e-value: 2.9E-8
score: 33.5
IPR001374R3H domainPROSITEPS51061R3Hcoord: 24..94
score: 10.583673
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..326
NoneNo IPR availableCDDcd02325R3Hcoord: 30..71
e-value: 5.91373E-9
score: 50.3054

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1634_length_9365_cov_4.623571contigNODE_1634_length_9365_cov_4.623571:7552..9256 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1Gcaud2481.t1Gracilaria caudata M_176_S67 malemRNANODE_1634_length_9365_cov_4.623571 7552..9256 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=531bp
MSDSELSDAPDAWLWKVMQKHKNREMIALLEDTLTSFVHDSQQTSLRFPP
RNAFHRRVCHAVARRYQLAHKLESIPNAHLSSSDALRLVLIKTSDSSVPA
RRLEHFAALPPPAQPQQPSPAQQQQQSLSSSANAHVDNCHANTSTNTTSN
PSQPPPSAATPARFLRRPTTANAKPARPRIPSVSSSLSSASAPALRSITE
EDYRKARARIFKPSSSTADISTATSSQQLPQKEQLEPQPSDLQQSQQQPF
ESQFQRIVKLNPSSIAKGPVQGSTGFERRRNRRKSSPESNHRAQPSQQPK
PQSSNTTTPLSSIQSRQNPQHENSRTSTARTRTDSRSIDSRSSSNSSVTN
PHSTPAATRRQPTFSSEPNNVDLQDPDFDRRYDKWAVRHPAPQQPAPQPI
PVPIFSQLLYPYAVQAPHHVHPSNMHLPQASAAMQQPITQYQSIVHHPSN
ALMFHHPGRSGLEFESRVSAPANVSAGFASSRALDAGETVVATSQAFANH
ISASSIGAQVVQRASPAYGLDSTVDFPPLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036867R3H_dom_sf
IPR001374R3H_dom