Gcaud2481.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2481.t1
Unique NameGcaud2481.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1634_length_9365_cov_4.623571contigNODE_1634_length_9365_cov_4.623571:7552..9256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706862.1
Preferred nameenc
PFAMsR3H,SUZ
Max annot lvl2759|Eukaryota
KEGG koko:K02360
KEGG Pathwayko04320,map04320
GOsGO:0000003,GO:0001709,GO:0003002,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007317,GO:0007389,GO:0008150,GO:0008283,GO:0008356,GO:0009653,GO:0009798,GO:0009950,GO:0009953,GO:0009987,GO:0009994,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030706,GO:0030716,GO:0030717,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0043900,GO:0044087,GO:0044424,GO:0044464,GO:0044703,GO:0045165,GO:0045595,GO:0045995,GO:0048134,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0051276,GO:0051301,GO:0051321,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0061982,GO:0061988,GO:0065007,GO:0070192,GO:0071840,GO:1902875,GO:1903046,GO:1903429,GO:1904580,GO:1905879,GO:2000026,GO:2000241
Evalue1.19e-10
EggNOG OGsKOG2953@1|root,KOG2953@2759|Eukaryota
Descriptioncalmodulin binding
COG categoryL
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2481Gcaud2481Gracilaria caudata M_176_S67 malegeneNODE_1634_length_9365_cov_4.623571 7552..9256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1Gcaud2481.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1634_length_9365_cov_4.623571 7552..9256 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1.stop1Gcaud2481.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1634_length_9365_cov_4.623571 7552..7554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1.CDS1Gcaud2481.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1634_length_9365_cov_4.623571 7552..8530 -
Gcaud2481.t1.CDS2Gcaud2481.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1634_length_9365_cov_4.623571 8643..9256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1.exon1Gcaud2481.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1634_length_9365_cov_4.623571 7552..8530 -
Gcaud2481.t1.exon2Gcaud2481.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1634_length_9365_cov_4.623571 8643..9256 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1.intron1Gcaud2481.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1634_length_9365_cov_4.623571 8531..8642 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2481.t1.start1Gcaud2481.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1634_length_9365_cov_4.623571 9254..9256 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp
MSDSELSDAPDAWLWKVMQKHKNREMIALLEDTLTSFVHDSQQTSLRFPP
RNAFHRRVCHAVARRYQLAHKLESIPNAHLSSSDALRLVLIKTSDSSVPA
RRLEHFAALPPPAQPQQPSPAQQQQQSLSSSANAHVDNCHANTSTNTTSN
PSQPPPSAATPARFLRRPTTANAKPARPRIPSVSSSLSSASAPALRSITE
EDYRKARARIFKPSSSTADISTATSSQQLPQKEQLEPQPSDLQQSQQQPF
ESQFQRIVKLNPSSIAKGPVQGSTGFERRRNRRKSSPESNHRAQPSQQPK
PQSSNTTTPLSSIQSRQNPQHENSRTSTARTRTDSRSIDSRSSSNSSVTN
PHSTPAATRRQPTFSSEPNNVDLQDPDFDRRYDKWAVRHPAPQQPAPQPI
PVPIFSQLLYPYAVQAPHHVHPSNMHLPQASAAMQQPITQYQSIVHHPSN
ALMFHHPGRSGLEFESRVSAPANVSAGFASSRALDAGETVVATSQAFANH
ISASSIGAQVVQRASPAYGLDSTVDFPPLQ*
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spliced messenger RNA

>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:7552..9256- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGACTCCGAGTTGTCCGACGCGCCTGACGCCTGGCTGTGGAAAGT
GATGCAAAAACATAAGAACCGAGAAATGATCGCCCTTTTGGAAGACACTC
TTACTTCGTTTGTACATGATTCCCAGCAAACCTCGCTTCGTTTCCCGCCT
AGAAACGCATTTCACCGTCGTGTGTGCCATGCTGTGGCGCGAAGATATCA
ACTAGCGCACAAGTTAGAATCCATCCCCAACGCGCATCTATCATCATCCG
ATGCTTTACGTCTAGTGCTCATCAAGACGTCCGATTCATCCGTCCCCGCC
CGTCGCCTCGAGCATTTTGCAGCGCTTCCGCCCCCAGCGCAACCGCAGCA
GCCCTCCCCTGCGCAGCAGCAACAACAGTCGCTCTCAAGTTCCGCCAATG
CACATGTTGATAACTGTCATGCCAATACCTCTACTAATACCACCTCTAAT
CCTTCTCAACCTCCGCCGTCCGCCGCCACTCCCGCCCGCTTTCTGCGAAG
GCCCACCACCGCCAATGCGAAGCCGGCACGCCCCCGTATCCCCTCCGTCT
CGTCTTCGCTCTCATCCGCCTCCGCGCCTGCTCTTCGAAGCATCACCGAA
GAGGACTACAGAAAAGCACGTGCAAGAATTTTCAAGCCATCCTCGTCCAC
AGCAGATATCAGTACAGCCACAAGCTCGCAACAACTGCCTCAAAAAGAAC
AGCTGGAACCTCAGCCATCAGATTTGCAGCAAAGTCAACAGCAGCCATTC
GAAAGCCAATTTCAGCGCATTGTGAAACTCAATCCCAGCTCTATCGCAAA
AGGTCCAGTACAAGGCTCAACGGGCTTCGAGCGTCGTCGCAACCGTCGCA
AAAGCTCACCCGAATCCAATCATCGTGCACAGCCGTCACAGCAACCGAAA
CCCCAATCCTCGAACACAACTACGCCTTTGTCATCAATTCAATCGCGTCA
GAATCCTCAACACGAGAATTCACGGACGTCGACAGCACGCACAAGGACGG
ATTCACGATCTATTGATTCGCGTTCTTCATCAAATTCGTCGGTGACCAAT
CCCCACTCTACGCCCGCAGCCACAAGAAGACAGCCAACATTTTCGTCGGA
ACCGAATAATGTTGATCTCCAGGATCCCGATTTTGACCGTCGTTATGACA
AATGGGCTGTGCGTCATCCTGCGCCACAGCAGCCAGCGCCGCAACCCATT
CCTGTTCCAATTTTCAGCCAGCTGCTTTATCCGTACGCTGTGCAAGCTCC
GCATCATGTCCACCCATCTAACATGCATCTTCCACAAGCGTCCGCTGCCA
TGCAGCAACCAATCACGCAATATCAATCCATCGTACATCATCCGTCGAAT
GCTCTTATGTTTCATCATCCTGGTCGTAGTGGACTTGAGTTTGAGTCTCG
CGTTAGCGCTCCCGCCAATGTTAGTGCTGGCTTCGCTTCCAGCCGTGCAC
TGGATGCAGGCGAGACTGTTGTGGCTACTTCTCAAGCATTTGCGAATCAC
ATTTCCGCTTCAAGTATTGGAGCGCAAGTTGTACAAAGAGCCTCTCCGGC
ATATGGTCTTGATTCTACTGTCGACTTTCCCCCTTTGCAGTGA
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protein sequence of Gcaud2481.t1

>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=531bp
MSDSELSDAPDAWLWKVMQKHKNREMIALLEDTLTSFVHDSQQTSLRFPP
RNAFHRRVCHAVARRYQLAHKLESIPNAHLSSSDALRLVLIKTSDSSVPA
RRLEHFAALPPPAQPQQPSPAQQQQQSLSSSANAHVDNCHANTSTNTTSN
PSQPPPSAATPARFLRRPTTANAKPARPRIPSVSSSLSSASAPALRSITE
EDYRKARARIFKPSSSTADISTATSSQQLPQKEQLEPQPSDLQQSQQQPF
ESQFQRIVKLNPSSIAKGPVQGSTGFERRRNRRKSSPESNHRAQPSQQPK
PQSSNTTTPLSSIQSRQNPQHENSRTSTARTRTDSRSIDSRSSSNSSVTN
PHSTPAATRRQPTFSSEPNNVDLQDPDFDRRYDKWAVRHPAPQQPAPQPI
PVPIFSQLLYPYAVQAPHHVHPSNMHLPQASAAMQQPITQYQSIVHHPSN
ALMFHHPGRSGLEFESRVSAPANVSAGFASSRALDAGETVVATSQAFANH
ISASSIGAQVVQRASPAYGLDSTVDFPPLQ*
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mRNA from alignment at NODE_1634_length_9365_cov_4.623571:7552..9256-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1705bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:7552..9256- (Gracilaria caudata M_176_S67 male)
ATGTCAGACTCCGAGTTGTCCGACGCGCCTGACGCCTGGCTGTGGAAAGT
GATGCAAAAACATAAGAACCGAGAAATGATCGCCCTTTTGGAAGACACTC
TTACTTCGTTTGTACATGATTCCCAGCAAACCTCGCTTCGTTTCCCGCCT
AGAAACGCATTTCACCGTCGTGTGTGCCATGCTGTGGCGCGAAGATATCA
ACTAGCGCACAAGTTAGAATCCATCCCCAACGCGCATCTATCATCATCCG
ATGCTTTACGTCTAGTGCTCATCAAGACGTCCGATTCATCCGTCCCCGCC
CGTCGCCTCGAGCATTTTGCAGCGCTTCCGCCCCCAGCGCAACCGCAGCA
GCCCTCCCCTGCGCAGCAGCAACAACAGTCGCTCTCAAGTTCCGCCAATG
CACATGTTGATAACTGTCATGCCAATACCTCTACTAATACCACCTCTAAT
CCTTCTCAACCTCCGCCGTCCGCCGCCACTCCCGCCCGCTTTCTGCGAAG
GCCCACCACCGCCAATGCGAAGCCGGCACGCCCCCGTATCCCCTCCGTCT
CGTCTTCGCTCTCATCCGCCTCCGCGCCTGCTCTTCGAAGCATCACCGAA
GAGGACTACAGAAAGTAAGTGCCGTCCCTCCGCAAACGCTATCATTAGAC
TACGATAGAATTCGTTCTCACCCCCGCTCATAACGCCGCGTACATGACTC
TAACCGATCTCTTCTACTCTGTCCAGAGCACGTGCAAGAATTTTCAAGCC
ATCCTCGTCCACAGCAGATATCAGTACAGCCACAAGCTCGCAACAACTGC
CTCAAAAAGAACAGCTGGAACCTCAGCCATCAGATTTGCAGCAAAGTCAA
CAGCAGCCATTCGAAAGCCAATTTCAGCGCATTGTGAAACTCAATCCCAG
CTCTATCGCAAAAGGTCCAGTACAAGGCTCAACGGGCTTCGAGCGTCGTC
GCAACCGTCGCAAAAGCTCACCCGAATCCAATCATCGTGCACAGCCGTCA
CAGCAACCGAAACCCCAATCCTCGAACACAACTACGCCTTTGTCATCAAT
TCAATCGCGTCAGAATCCTCAACACGAGAATTCACGGACGTCGACAGCAC
GCACAAGGACGGATTCACGATCTATTGATTCGCGTTCTTCATCAAATTCG
TCGGTGACCAATCCCCACTCTACGCCCGCAGCCACAAGAAGACAGCCAAC
ATTTTCGTCGGAACCGAATAATGTTGATCTCCAGGATCCCGATTTTGACC
GTCGTTATGACAAATGGGCTGTGCGTCATCCTGCGCCACAGCAGCCAGCG
CCGCAACCCATTCCTGTTCCAATTTTCAGCCAGCTGCTTTATCCGTACGC
TGTGCAAGCTCCGCATCATGTCCACCCATCTAACATGCATCTTCCACAAG
CGTCCGCTGCCATGCAGCAACCAATCACGCAATATCAATCCATCGTACAT
CATCCGTCGAATGCTCTTATGTTTCATCATCCTGGTCGTAGTGGACTTGA
GTTTGAGTCTCGCGTTAGCGCTCCCGCCAATGTTAGTGCTGGCTTCGCTT
CCAGCCGTGCACTGGATGCAGGCGAGACTGTTGTGGCTACTTCTCAAGCA
TTTGCGAATCACATTTCCGCTTCAAGTATTGGAGCGCAAGTTGTACAAAG
AGCCTCTCCGGCATATGGTCTTGATTCTACTGTCGACTTTCCCCCTTTGC
AGTGA
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Coding sequence (CDS) from alignment at NODE_1634_length_9365_cov_4.623571:7552..9256-

>Gcaud2481.t1 ID=Gcaud2481.t1|Name=Gcaud2481.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1593bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:7552..9256- (Gracilaria caudata M_176_S67 male)
ATGTCAGACTCCGAGTTGTCCGACGCGCCTGACGCCTGGCTGTGGAAAGT
GATGCAAAAACATAAGAACCGAGAAATGATCGCCCTTTTGGAAGACACTC
TTACTTCGTTTGTACATGATTCCCAGCAAACCTCGCTTCGTTTCCCGCCT
AGAAACGCATTTCACCGTCGTGTGTGCCATGCTGTGGCGCGAAGATATCA
ACTAGCGCACAAGTTAGAATCCATCCCCAACGCGCATCTATCATCATCCG
ATGCTTTACGTCTAGTGCTCATCAAGACGTCCGATTCATCCGTCCCCGCC
CGTCGCCTCGAGCATTTTGCAGCGCTTCCGCCCCCAGCGCAACCGCAGCA
GCCCTCCCCTGCGCAGCAGCAACAACAGTCGCTCTCAAGTTCCGCCAATG
CACATGTTGATAACTGTCATGCCAATACCTCTACTAATACCACCTCTAAT
CCTTCTCAACCTCCGCCGTCCGCCGCCACTCCCGCCCGCTTTCTGCGAAG
GCCCACCACCGCCAATGCGAAGCCGGCACGCCCCCGTATCCCCTCCGTCT
CGTCTTCGCTCTCATCCGCCTCCGCGCCTGCTCTTCGAAGCATCACCGAA
GAGGACTACAGAAAAGCACGTGCAAGAATTTTCAAGCCATCCTCGTCCAC
AGCAGATATCAGTACAGCCACAAGCTCGCAACAACTGCCTCAAAAAGAAC
AGCTGGAACCTCAGCCATCAGATTTGCAGCAAAGTCAACAGCAGCCATTC
GAAAGCCAATTTCAGCGCATTGTGAAACTCAATCCCAGCTCTATCGCAAA
AGGTCCAGTACAAGGCTCAACGGGCTTCGAGCGTCGTCGCAACCGTCGCA
AAAGCTCACCCGAATCCAATCATCGTGCACAGCCGTCACAGCAACCGAAA
CCCCAATCCTCGAACACAACTACGCCTTTGTCATCAATTCAATCGCGTCA
GAATCCTCAACACGAGAATTCACGGACGTCGACAGCACGCACAAGGACGG
ATTCACGATCTATTGATTCGCGTTCTTCATCAAATTCGTCGGTGACCAAT
CCCCACTCTACGCCCGCAGCCACAAGAAGACAGCCAACATTTTCGTCGGA
ACCGAATAATGTTGATCTCCAGGATCCCGATTTTGACCGTCGTTATGACA
AATGGGCTGTGCGTCATCCTGCGCCACAGCAGCCAGCGCCGCAACCCATT
CCTGTTCCAATTTTCAGCCAGCTGCTTTATCCGTACGCTGTGCAAGCTCC
GCATCATGTCCACCCATCTAACATGCATCTTCCACAAGCGTCCGCTGCCA
TGCAGCAACCAATCACGCAATATCAATCCATCGTACATCATCCGTCGAAT
GCTCTTATGTTTCATCATCCTGGTCGTAGTGGACTTGAGTTTGAGTCTCG
CGTTAGCGCTCCCGCCAATGTTAGTGCTGGCTTCGCTTCCAGCCGTGCAC
TGGATGCAGGCGAGACTGTTGTGGCTACTTCTCAAGCATTTGCGAATCAC
ATTTCCGCTTCAAGTATTGGAGCGCAAGTTGTACAAAGAGCCTCTCCGGC
ATATGGTCTTGATTCTACTGTCGACTTTCCCCCTTTGCAGTGA
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