Gcaud2474.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2474.t1
Unique NameGcaud2474.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length198
Homology
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BLAST of Gcaud2474.t1 vs. uniprot
Match: A0A2V3J199_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J199_9FLOR)

HSP 1 Score: 309 bits (791), Expect = 3.360e-100
Identity = 149/195 (76.41%), Postives = 174/195 (89.23%), Query Frame = 0 
Query:    3 DELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG 197
            +E  RTPS K+ +LGNLACSSRDQN +ALL+HAVQQL RY+IVSYNAE+++ L AYIIGK T+RGWG+LQALVSGV LVS+NWLS SISEGKWVPM+ FRSDRFGQSPRSV  A E   KLLDGLR+RV+S +KDA+SIRK++RLCGARLAETRVD+VINDSK+KV+ CPNVQKKWLADSIE+GVPL+YEPY +G
Sbjct:  357 EETVRTPSFKMQLLGNLACSSRDQNTQALLEHAVQQLRRYNIVSYNAETSSPLIAYIIGKETRRGWGVLQALVSGVALVSDNWLSSSISEGKWVPMDDFRSDRFGQSPRSVNSAAEGPAKLLDGLRVRVISNDKDAASIRKVVRLCGARLAETRVDVVINDSKKKVEGCPNVQKKWLADSIESGVPLDYEPYLIG 551
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BLAST of Gcaud2474.t1 vs. uniprot
Match: R7QDD6_CHOCR (BRCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD6_CHOCR)

HSP 1 Score: 248 bits (633), Expect = 8.750e-81
Identity = 125/192 (65.10%), Postives = 154/192 (80.21%), Query Frame = 0 
Query:    4 ELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAESNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNAFRSDRFGQSPRSV-AGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGARLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPY 194
            E+ARTP+ K AILG LACSSRD NA ALL+HAVQQLG+Y I+SY  ES   + AYI+GK TKRGWGLLQA+  GVPLVSE+WLS SISEGKW  MN FRSD+FGQSPRSV AGA   R  +L+G RI+++S +KDA+SIRK+++LCG R+AETR+D+VIND    +  C NV+KKWLADS+EAG  +++E Y
Sbjct:   22 EVARTPA-KQAILGRLACSSRDGNASALLEHAVQQLGKYEIISYGPESEGEIKAYIVGKETKRGWGLLQAIACGVPLVSEDWLSSSISEGKWKAMNVFRSDQFGQSPRSVEAGATTVR--ILEGQRIKILSDKKDAASIRKLVKLCGGRIAETRMDVVINDGAHVLGGCANVEKKWLADSVEAGEVMDFEGY 210
The following BLAST results are available for this feature:
BLAST of Gcaud2474.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J199_9FLOR3.360e-10076.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDD6_CHOCR8.750e-8165.10BRCT domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 17..110
e-value: 5.2E-9
score: 38.4
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 114..194
e-value: 1.9E-6
score: 29.7
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 65..196
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 119..196
score: 9.94556

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:6756..7349 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2474.t1Gcaud2474.t1Gracilaria caudata M_176_S67 malemRNANODE_1056_length_14488_cov_4.591929 6756..7349 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAE
SNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNA
FRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGA
RLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom