Gcaud2474.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2474.t1
Unique Name	Gcaud2474.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1056_length_14488_cov_4.591929	contig	NODE_1056_length_14488_cov_4.591929:6756..7349 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI009506-PA
Preferred name	MCPH1
PFAMs	BRCT,BRCT_2,Microcephalin,PTCB-BRCT
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19403
GOs	GO:0000003,GO:0000122,GO:0000132,GO:0000226,GO:0000278,GO:0001501,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007050,GO:0007163,GO:0007275,GO:0007276,GO:0007277,GO:0007279,GO:0007346,GO:0007349,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0016043,GO:0016319,GO:0019219,GO:0019220,GO:0019222,GO:0019827,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022402,GO:0022412,GO:0022414,GO:0030010,GO:0030154,GO:0030900,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034613,GO:0040001,GO:0042325,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045448,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0046605,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051293,GO:0051294,GO:0051338,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0060255,GO:0060322,GO:0060348,GO:0060623,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071539,GO:0071840,GO:0071850,GO:0072698,GO:0080090,GO:0080134,GO:0097150,GO:0098727,GO:1902679,GO:1902850,GO:1903047,GO:1903506,GO:1903507,GO:1905508,GO:2000112,GO:2000113,GO:2001141
Evalue	8.88e-10
EggNOG OGs	KOG4362@1\|root,KOG4362@2759\|Eukaryota,39SBQ@33154\|Opisthokonta,3BANR@33208\|Metazoa,3CZH1@33213\|Bilateria,41ZXZ@6656\|Arthropoda,3SNIN@50557\|Insecta,3EE5V@33342\|Paraneoptera
Description	twin BRCT domain
COG category	L
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2474	Gcaud2474	Gracilaria caudata M_176_S67 male	gene	NODE_1056_length_14488_cov_4.591929 6756..8435 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t1.stop1	Gcaud2474.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1056_length_14488_cov_4.591929 6756..6758 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t1.CDS1	Gcaud2474.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1056_length_14488_cov_4.591929 6756..7349 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t1.exon1	Gcaud2474.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1056_length_14488_cov_4.591929 6756..7349 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t1.start1	Gcaud2474.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1056_length_14488_cov_4.591929 7347..7349 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2474.t1	Gcaud2474.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1056_length_14488_cov_4.591929 6756..7349 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349-
coding sequence from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349-

mRNA sequence

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
MGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAE
SNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNA
FRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGA
RLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*

spliced messenger RNA

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=594bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGATGAATTGGCCAGGACACCGTCTTCGAAGCTGGCGATTCTAGG
TAACCTTGCCTGCAGTTCTCGAGATCAGAACGCAGAAGCACTTCTTGATC
ATGCCGTGCAGCAGCTTGGCCGGTACCACATTGTGTCGTACAATGCTGAA
TCGAACACCGGATTAACAGCATACATCATTGGCAAAGGAACGAAACGGGG
ATGGGGTTTGCTGCAGGCTTTGGTAAGCGGTGTTCCACTGGTATCTGAGA
ACTGGTTGTCTGGATCCATATCTGAGGGGAAGTGGGTGCCCATGAACGCC
TTTCGAAGTGATAGATTCGGTCAGTCGCCTCGCTCCGTGGCAGGTGCAGA
AGAGGCCAGGGGCAAACTCCTGGACGGCCTTCGAATTCGGGTTGTATCAA
CGGAAAAGGATGCGTCAAGTATCCGTAAGATTATACGACTCTGTGGGGCG
CGCTTGGCTGAGACCAGGGTTGACCTCGTGATTAACGACTCCAAGAGAAA
AGTTGATACGTGCCCTAACGTACAGAAGAAGTGGTTGGCAGACTCTATCG
AAGCTGGGGTTCCTCTAGAGTACGAACCATACTCGTTGGGTTAA

protein sequence of Gcaud2474.t1

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MGDELARTPSSKLAILGNLACSSRDQNAEALLDHAVQQLGRYHIVSYNAE
SNTGLTAYIIGKGTKRGWGLLQALVSGVPLVSENWLSGSISEGKWVPMNA
FRSDRFGQSPRSVAGAEEARGKLLDGLRIRVVSTEKDASSIRKIIRLCGA
RLAETRVDLVINDSKRKVDTCPNVQKKWLADSIEAGVPLEYEPYSLG*

mRNA from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=594bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349- (Gracilaria caudata M_176_S67 male)
ATGGGAGATGAATTGGCCAGGACACCGTCTTCGAAGCTGGCGATTCTAGG
TAACCTTGCCTGCAGTTCTCGAGATCAGAACGCAGAAGCACTTCTTGATC
ATGCCGTGCAGCAGCTTGGCCGGTACCACATTGTGTCGTACAATGCTGAA
TCGAACACCGGATTAACAGCATACATCATTGGCAAAGGAACGAAACGGGG
ATGGGGTTTGCTGCAGGCTTTGGTAAGCGGTGTTCCACTGGTATCTGAGA
ACTGGTTGTCTGGATCCATATCTGAGGGGAAGTGGGTGCCCATGAACGCC
TTTCGAAGTGATAGATTCGGTCAGTCGCCTCGCTCCGTGGCAGGTGCAGA
AGAGGCCAGGGGCAAACTCCTGGACGGCCTTCGAATTCGGGTTGTATCAA
CGGAAAAGGATGCGTCAAGTATCCGTAAGATTATACGACTCTGTGGGGCG
CGCTTGGCTGAGACCAGGGTTGACCTCGTGATTAACGACTCCAAGAGAAA
AGTTGATACGTGCCCTAACGTACAGAAGAAGTGGTTGGCAGACTCTATCG
AAGCTGGGGTTCCTCTAGAGTACGAACCATACTCGTTGGGTTAA

Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349-

>Gcaud2474.t1 ID=Gcaud2474.t1|Name=Gcaud2474.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=594bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:6756..7349- (Gracilaria caudata M_176_S67 male)
ATGGGAGATGAATTGGCCAGGACACCGTCTTCGAAGCTGGCGATTCTAGG
TAACCTTGCCTGCAGTTCTCGAGATCAGAACGCAGAAGCACTTCTTGATC
ATGCCGTGCAGCAGCTTGGCCGGTACCACATTGTGTCGTACAATGCTGAA
TCGAACACCGGATTAACAGCATACATCATTGGCAAAGGAACGAAACGGGG
ATGGGGTTTGCTGCAGGCTTTGGTAAGCGGTGTTCCACTGGTATCTGAGA
ACTGGTTGTCTGGATCCATATCTGAGGGGAAGTGGGTGCCCATGAACGCC
TTTCGAAGTGATAGATTCGGTCAGTCGCCTCGCTCCGTGGCAGGTGCAGA
AGAGGCCAGGGGCAAACTCCTGGACGGCCTTCGAATTCGGGTTGTATCAA
CGGAAAAGGATGCGTCAAGTATCCGTAAGATTATACGACTCTGTGGGGCG
CGCTTGGCTGAGACCAGGGTTGACCTCGTGATTAACGACTCCAAGAGAAA
AGTTGATACGTGCCCTAACGTACAGAAGAAGTGGTTGGCAGACTCTATCG
AAGCTGGGGTTCCTCTAGAGTACGAACCATACTCGTTGGGTTAA