Gcaud2464.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2464.t1
Unique NameGcaud2464.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length669
Homology
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A2V3IVU5_9FLOR (Double-strand-break repair protein rad21-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVU5_9FLOR)

HSP 1 Score: 638 bits (1646), Expect = 2.420e-220
Identity = 435/680 (63.97%), Postives = 483/680 (71.03%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLPAITLPSIDALQPPNIDLHLVPSRLEPPPSSAFLAADRDITIHQFAGGLMGGIIDAFSLEPQLPRDADAALELDTQPLLFTPSQR-VRHTPLTPSVRSSEPSAERLRAEDEQERAAESPAPPPLLPVERERLE----LEPEEEPSLVFGERVPSPPATPPAREAVPLPXXXXXXXXXXXXXXXXXPSD----AAIPSARISVGSDRLEL-QPSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGRKRKLYVLADEGATEISAAQFRAALNDTSDLLRQQQPVQRRRVRAGAAERFEQLISRPTVPLAPQLMQLFEANFRAHELIVASPISDADLGGEGEAVGEARKELEAXXXXXXXXXXXXXXXXXXXXXRVEKEVTADPSMIQLEEMEAVVPRVEEEDIMPVA-AVPAPRDTISPVLPPALPETE----EPRAVSMGRESVAVSVAASIAADDEAQFTLRQVADTAAQVDGEQLVNEATVSARTRRMQEFIMTRLEEGEFDFSGALAEVGGRRTAARCFYELLNLSNKKALAVRQDEPYGTIWARPIQPTFNTL 665
            MFYSQHVLTKKGPLAKIWLAAHM +K+TKAMVFSTNI  AV SIL+PDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRA+     D    N A + AITLP+IDAL+PPNIDL LVPSR  PPPSSAFLAAD+DITI Q+AGGLMGGIIDAF+LEPQLPRD +  LELD +PLLFTPSQR  + TPLTPSVRS EPS E+LRAE       E+PAPP L  VERER E    +EP + P LVF E  PS PA P  R + P P                 P      A++P ARISVGSDRL L QP  P       XXXX                XXXXXXXXXXX     RRGRKRKLYV+ADEGATEISAA FRAALNDTSDL RQ  P QRRR     A RFE LISRPTVPLAPQLM+LF  NFRA ELI+ASPISDADLG   E + EA K    XXXXXXXXX              EKEVTADP+M +L E+E     +E  ++  V  AVPAPR+TISPVLPP   E E     P  +S   ES   S++ S A + EA F+L QVA T AQV+ E+ V EATVSARTR+MQEFI +RL++GEFDF+ ALAEVGGRRTAARCFYELLNLSNKKALA+RQ+E YG IWARP+QPTF++L
Sbjct:    1 MFYSQHVLTKKGPLAKIWLAAHMQSKITKAMVFSTNIHTAVRSILSPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRAQRTDLSD----NTAAIQAITLPNIDALEPPNIDLDLVPSRAAPPPSSAFLAADQDITIEQYAGGLMGGIIDAFALEPQLPRDTE--LELDAEPLLFTPSQRQTQTTPLTPSVRS-EPSVEQLRAEQPPPEE-EAPAPPELS-VERERAEQLEQIEPVQ-PELVF-EPTPSRPAVPSPRPSSPAPPERLAPEPPVTPESERLPRPXXXPASLPPARISVGSDRLMLEQPETPLAALPEEXXXXQVMPPGSPVPPEEGEQXXXXXXXXXXX-----RRGRKRKLYVMADEGATEISAADFRAALNDTSDLRRQ--PTQRRRTAVSRAMRFEDLISRPTVPLAPQLMELFSDNFRADELILASPISDADLGERPEQLEEAEKXXXXXXXXXXXXXTP------------EKEVTADPTMARLLELEPPTVPLEVGEVPLVEPAVPAPRETISPVLPPPEVEMEVEPIPPLELSAAAESARESLSVSAAPEGEAPFSLSQVAKTVAQVEAEESVTEATVSARTRKMQEFIASRLQDGEFDFTQALAEVGGRRTAARCFYELLNLSNKKALALRQEEAYGRIWARPVQPTFDSL 650          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A7S3ED03_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED03_9RHOD)

HSP 1 Score: 123 bits (308), Expect = 1.310e-29
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRART 93
            MFYSQ++LT++GPL++IWLAAHM NKLTK MVFS ++  A   I+ P+ PMALRLTSNLLLGVVR+  RK KYLL + SDA++R+KL F+  T
Sbjct:    1 MFYSQYILTRRGPLSRIWLAAHMQNKLTKTMVFSIDLVKACEKIIAPEAPMALRLTSNLLLGVVRVYLRKAKYLLSDCSDAVSRIKLAFKIST 93          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A7S3EBL5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBL5_9RHOD)

HSP 1 Score: 123 bits (308), Expect = 1.430e-29
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRART 93
            MFYSQ++LT++GPL++IWLAAHM NKLTK MVFS ++  A   I+ P+ PMALRLTSNLLLGVVR+  RK KYLL + SDA++R+KL F+  T
Sbjct:    1 MFYSQYILTRRGPLSRIWLAAHMQNKLTKTMVFSIDLVKACEKIIAPEAPMALRLTSNLLLGVVRVYLRKAKYLLSDCSDAVSRIKLAFKIST 93          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A016WYY7_9BILA (Rad21_Rec8_N domain-containing protein n=3 Tax=Ancylostoma TaxID=29169 RepID=A0A016WYY7_9BILA)

HSP 1 Score: 118 bits (296), Expect = 5.710e-27
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLPAITLPSI 115
            MFY+Q VL+KKGPLAKIWLAAH   KL+KA ++ TN+Q AV  IL P V MALR T +LLLGVVRI SRKTKYLL + ++A  ++K+ FR       D      APL AI+LP +
Sbjct:    1 MFYAQFVLSKKGPLAKIWLAAHWEKKLSKAQIYETNVQDAVDEILKPKVKMALRTTGHLLLGVVRIYSRKTKYLLADCNEAFLKIKMAFRPGQIEAIDE--GKEAPLAAISLPEV 113          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A183IIM3_9BILA (Rad21_Rec8_N domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IIM3_9BILA)

HSP 1 Score: 116 bits (291), Expect = 6.240e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALP--TNVAPLPAITLPSI 115
            MFYSQ VL+K+GPLAKIW+AAH   KLTKA VF TNI  AV SIL P V MALR T +LLLG+VRI SRK KYLL + S+A  ++K++FR      P  LP  +  A +  ITLP +
Sbjct:    1 MFYSQVVLSKRGPLAKIWIAAHWEKKLTKAQVFDTNIDKAVESILEPKVKMALRTTGHLLLGIVRIYSRKAKYLLADCSEAFLKMKMSFRPGV---PVDLPEDSRQAAMNTITLPEV 114          
BLAST of Gcaud2464.t1 vs. uniprot
Match: D8T2I1_SELML (Rad21_Rec8_N domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T2I1_SELML)

HSP 1 Score: 112 bits (281), Expect = 8.360e-26
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLP--AITLP 113
            MFYSQ++L KKGPL  IW+AAH+  KL K  V  TNI  +V SIL P+VP+ALRL+ +LLLGVVRI SRK  YL  + +DA+ +LK  F + T+A  D LP + A  P  +ITLP
Sbjct:    1 MFYSQYILAKKGPLGTIWIAAHLEKKLRKNQVNDTNISTSVDSILFPEVPIALRLSGHLLLGVVRIYSRKVNYLFHDCNDALVKLKNAFSSATSASVD-LPADAASAPFHSITLP 114          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A0N4XTA1_NIPBR (Rad21_Rec8_N domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XTA1_NIPBR)

HSP 1 Score: 113 bits (283), Expect = 1.040e-25
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLPAITLPSI 115
            MFY+Q VL+KKGPLAKIWLAAH   KL+KA ++ TN+Q AV  IL P V MALR T +LLLG+VRI SRK KYLL + ++A  ++K+ FR+      +      AP  AI+LP +
Sbjct:    1 MFYAQFVLSKKGPLAKIWLAAHWEKKLSKAQIYETNVQDAVDEILQPKVKMALRTTGHLLLGIVRIYSRKAKYLLADCNEAFLKIKMAFRSGQVEMIED--GKEAPFNAISLPEV 113          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A1E1W3K9_PECGO (Rad21_Rec8_N domain-containing protein (Fragment) n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1W3K9_PECGO)

HSP 1 Score: 115 bits (287), Expect = 1.510e-25
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLPAITLPSI 115
            MFY+  VL KKGPLAKIWLAAH   KLTKA VF TNI+ +V  IL P V MALR + +LLLGVVRI SRK KYLLQ+ ++A  ++K+ FR      P+      A + AITLP +
Sbjct:    1 MFYAHFVLAKKGPLAKIWLAAHWDKKLTKAHVFETNIEQSVDGILKPKVKMALRTSGHLLLGVVRIYSRKAKYLLQDCNEAFVKIKMAFRPGMVDLPEE--HREAAMNAITLPEV 113          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A0K0D8F3_ANGCA (Rad21_Rec8_N domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0D8F3_ANGCA)

HSP 1 Score: 114 bits (285), Expect = 1.850e-25
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDALPTNVAPLPAITLPSI 115
            MFY+Q VL+KKGPLAKIWLAAH   KL+KA ++ T++Q AV  I+ P V MALR T +LLLG+VRI SRKTKYLL + ++A  ++K+ FR       D      APL AI+LP +
Sbjct:    1 MFYAQFVLSKKGPLAKIWLAAHWEKKLSKAQIYETSVQDAVEEIIRPKVKMALRTTGHLLLGIVRIYSRKTKYLLADCNEAFLKIKMAFRPGQIELIDD--GKEAPLNAISLPEV 113          
BLAST of Gcaud2464.t1 vs. uniprot
Match: A0A5J4YM86_PORPP (Double-strand-break repair protein rad21-like n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM86_PORPP)

HSP 1 Score: 122 bits (305), Expect = 2.690e-25
Identity = 90/237 (37.97%), Postives = 125/237 (52.74%), Query Frame = 0
Query:    1 MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVPMALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFR----------------------ARTAAHPDA-----LPTNVAPLPA---ITLPSIDALQPPNIDLHLVPSRLEPPPS-SAFLAADRDITI--HQFAGG----LMGGIIDAFSLEPQLPRDADAALELDTQPLLFTPSQRVRHTPLTP 200
            MFYS H+LTKKG L+K+WLAAHM +KLTK MV S +++ + +SI+ P+ P+ALRL+SNL+LGVVRI S+KTKYLL + ++AM +L+   R                      A  AAH  A     +  NV P+       L  +D L+  +    L+   L    S S F A++RDIT+  H    G      GG +   SL+     D D     + QPL F PS++   +P  P
Sbjct:    1 MFYSSHILTKKGALSKVWLAAHMQHKLTKGMVTSVDVEQSCTSIVQPEAPLALRLSSNLMLGVVRIYSKKTKYLLSDCTEAMAKLRTMLRPGAGFEWRDDDNVAAPYAAITLADPAAHAGAGHGALMAINVEPIEDDGNTMLMDLDFLENDSASASLMQHSLSRALSQSGFQASERDITMDDHSSLTGEDSYQSGGHLSGMSLDLAAAADID-----EQQPLPFVPSRQRSASPAEP 232          
The following BLAST results are available for this feature:
BLAST of Gcaud2464.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVU5_9FLOR2.420e-22063.97Double-strand-break repair protein rad21-like n=1 ... [more]
A0A7S3ED03_9RHOD1.310e-2963.44Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S3EBL5_9RHOD1.430e-2963.44Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A016WYY7_9BILA5.710e-2756.52Rad21_Rec8_N domain-containing protein n=3 Tax=Anc... [more]
A0A183IIM3_9BILA6.240e-2757.26Rad21_Rec8_N domain-containing protein n=1 Tax=Sob... [more]
D8T2I1_SELML8.360e-2654.78Rad21_Rec8_N domain-containing protein (Fragment) ... [more]
A0A0N4XTA1_NIPBR1.040e-2553.04Rad21_Rec8_N domain-containing protein n=1 Tax=Nip... [more]
A0A1E1W3K9_PECGO1.510e-2555.65Rad21_Rec8_N domain-containing protein (Fragment) ... [more]
A0A0K0D8F3_ANGCA1.850e-2553.91Rad21_Rec8_N domain-containing protein n=1 Tax=Ang... [more]
A0A5J4YM86_PORPP2.690e-2537.97Double-strand-break repair protein rad21-like n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 455..489
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 327..352
score: 30.0
coord: 220..236
score: 24.71
coord: 308..325
score: 32.22
coord: 268..289
score: 41.82
coord: 255..267
score: 29.23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 449..472
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 452..469
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..363
IPR023093ScpA-like, C-terminalGENE3D1.10.10.580Structural maintenance of chromosome 1. Chain Ecoord: 566..663
e-value: 1.4E-6
score: 30.0
IPR006909Rad21/Rec8-like protein, C-terminal, eukaryoticPFAMPF04824Rad21_Rec8coord: 608..656
e-value: 1.2E-10
score: 40.4
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 1..92
e-value: 1.4E-33
score: 115.4
IPR039781Rad21/Rec8-like proteinPANTHERPTHR12585SCC1 / RAD21 FAMILY MEMBERcoord: 1..656
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 594..657

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1614_length_9483_cov_3.228492contigNODE_1614_length_9483_cov_3.228492:526..2532 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2464.t1Gcaud2464.t1Gracilaria caudata M_176_S67 malemRNANODE_1614_length_9483_cov_3.228492 526..2532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=669bp
MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVP
MALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDAL
PTNVAPLPAITLPSIDALQPPNIDLHLVPSRLEPPPSSAFLAADRDITIH
QFAGGLMGGIIDAFSLEPQLPRDADAALELDTQPLLFTPSQRVRHTPLTP
SVRSSEPSAERLRAEDEQERAAESPAPPPLLPVERERLELEPEEEPSLVF
GERVPSPPATPPAREAVPLPTPPMPESAEPIAPPSPMPSDAAIPSARISV
GSDRLELQPSPPGPVAPTEPERTPPLSPLPPPLPPSSPLPPEPEPGQPPA
SPPTPRRGRKRKLYVLADEGATEISAAQFRAALNDTSDLLRQQQPVQRRR
VRAGAAERFEQLISRPTVPLAPQLMQLFEANFRAHELIVASPISDADLGG
EGEAVGEARKELEAQEEEEEELRKEREEVEAEKEMRVEKEVTADPSMIQL
EEMEAVVPRVEEEDIMPVAAVPAPRDTISPVLPPALPETEEPRAVSMGRE
SVAVSVAASIAADDEAQFTLRQVADTAAQVDGEQLVNEATVSARTRRMQE
FIMTRLEEGEFDFSGALAEVGGRRTAARCFYELLNLSNKKALAVRQDEPY
GTIWARPIQPTFNTLLQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023093ScpA-like_C
IPR006909Rad21/Rec8_C_eu
IPR006910Rad21_Rec8_N
IPR039781Rad21/Rec8-like
IPR036390WH_DNA-bd_sf