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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 6334.EFV54623 |
| Preferred name | RAD21 |
| PFAMs | Rad21_Rec8,Rad21_Rec8_N |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K06670 |
| KEGG Pathway | ko04110,ko04111,map04110,map04111 |
| GOs | GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000819,GO:0000981,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005721,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007275,GO:0007346,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010972,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030182,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045132,GO:0045143,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045876,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0048285,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051984,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070727,GO:0071168,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902680,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905818,GO:1905819,GO:2000112,GO:2000816,GO:2001141,GO:2001251,GO:2001252 |
| Evalue | 1.66e-24 |
| EggNOG OGs | KOG1213@1|root,KOG1213@2759|Eukaryota,38H3N@33154|Opisthokonta,3BCQ9@33208|Metazoa,3CV7T@33213|Bilateria,40CV7@6231|Nematoda |
| Description | N terminus of Rad21 / Rec8 like protein |
| COG category | D |
| BRITE | ko00000,ko00001,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2464.t1.start1 | Gcaud2464.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1614_length_9483_cov_3.228492 526..528 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2464.t1.stop1 | Gcaud2464.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1614_length_9483_cov_3.228492 2530..2532 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVP MALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDAL PTNVAPLPAITLPSIDALQPPNIDLHLVPSRLEPPPSSAFLAADRDITIH QFAGGLMGGIIDAFSLEPQLPRDADAALELDTQPLLFTPSQRVRHTPLTP SVRSSEPSAERLRAEDEQERAAESPAPPPLLPVERERLELEPEEEPSLVF GERVPSPPATPPAREAVPLPTPPMPESAEPIAPPSPMPSDAAIPSARISV GSDRLELQPSPPGPVAPTEPERTPPLSPLPPPLPPSSPLPPEPEPGQPPA SPPTPRRGRKRKLYVLADEGATEISAAQFRAALNDTSDLLRQQQPVQRRR VRAGAAERFEQLISRPTVPLAPQLMQLFEANFRAHELIVASPISDADLGG EGEAVGEARKELEAQEEEEEELRKEREEVEAEKEMRVEKEVTADPSMIQL EEMEAVVPRVEEEDIMPVAAVPAPRDTISPVLPPALPETEEPRAVSMGRE SVAVSVAASIAADDEAQFTLRQVADTAAQVDGEQLVNEATVSARTRRMQE FIMTRLEEGEFDFSGALAEVGGRRTAARCFYELLNLSNKKALAVRQDEPY GTIWARPIQPTFNTLLQS* back to topspliced messenger RNA >Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:526..2532+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCTACTCGCAGCATGTTCTCACCAAGAAGGGTCCCCTCGCCAAGAT ATGGCTCGCCGCGCACATGCACAACAAACTCACCAAGGCCATGGTGTTCT CCACCAACATCCAACACGCCGTGTCCTCCATTCTCACCCCCGACGTGCCC ATGGCCCTCCGTCTCACCTCCAACCTTCTGCTTGGCGTCGTGCGCATTCT CTCCCGCAAAACGAAGTATCTGCTTCAAGAATCCTCTGATGCCATGACGC GTCTCAAGCTCACCTTCCGCGCACGCACTGCCGCGCACCCCGACGCCCTC CCCACCAACGTCGCGCCCTTACCCGCCATCACGCTCCCGTCCATCGACGC GCTACAACCTCCAAACATCGATCTGCACCTGGTGCCGTCGCGTCTCGAGC CGCCGCCCTCGTCCGCATTCCTGGCCGCCGATCGCGACATCACCATCCAC CAATTCGCCGGCGGGCTTATGGGCGGTATCATCGATGCCTTCTCGTTGGA ACCACAACTTCCGCGCGATGCTGACGCCGCGCTGGAGCTCGATACGCAGC CGTTGCTGTTCACGCCAAGCCAGCGTGTGCGTCACACCCCTCTCACCCCG TCCGTCCGCAGCTCCGAGCCCTCCGCGGAGCGCCTGCGCGCCGAAGATGA GCAAGAGCGCGCGGCCGAATCGCCCGCGCCACCGCCGCTGTTGCCTGTGG AGCGCGAGCGACTGGAATTGGAGCCGGAAGAGGAACCTTCGTTAGTCTTT GGCGAACGTGTTCCGTCGCCTCCTGCTACGCCGCCGGCGCGCGAAGCGGT GCCGCTACCCACGCCCCCCATGCCGGAGTCTGCGGAGCCTATTGCGCCGC CGTCGCCGATGCCGTCCGACGCCGCGATACCTTCCGCTCGCATCTCCGTC GGCAGCGACCGTCTAGAGCTCCAACCCTCGCCGCCCGGCCCCGTTGCGCC CACCGAACCCGAGCGAACTCCTCCCTTGTCGCCGCTACCACCGCCCCTAC CACCCAGTTCCCCCCTGCCACCCGAACCCGAGCCCGGGCAACCACCGGCC TCCCCGCCCACGCCGCGGCGCGGACGCAAACGCAAGCTGTACGTGCTGGC GGACGAGGGCGCCACCGAAATCTCCGCCGCACAGTTCCGCGCCGCGCTCA ACGACACCTCTGATCTGTTGCGCCAGCAACAGCCGGTGCAGCGGCGGCGT GTACGCGCCGGCGCGGCGGAGCGCTTTGAGCAATTGATTTCGAGACCGAC TGTGCCGTTGGCGCCGCAGCTGATGCAGCTGTTCGAAGCGAATTTCCGTG CGCACGAGCTGATTGTAGCGAGCCCGATttcggacgcggaccttgggggg gagggggaggcggtgggggaggcgcggaaggagcttgaggctcaggagga ggaggaggaggagctgcggaaggagcgtgaagaggtTGAAGCGGAGAAGG AGATGCGTGTTGAGAAGGAGGTCACCGCTGACCCTTCCATGATACAGCTG GAGGAGATGGAAGCAGTGGTGCCGCGCGTAGAGGAAGAGGATATCATGCC TGTCGCTGCGGTCCCAGCGCCTCGTGACACAATCTCACCCGTGCTGCCGC CAGCGCTGCCGGAGACGGAAGAACCGCGCGCGGTGTCGATGGGACGCGAG TCGGTGGCGGTGTCAGTAGCGGCGTCTATCGCGGCGGACGACGAAGCTCA GTTCACGCTTCGACAAGTGGCCGATACCGCGGCGCAAGTAGACGGCGAAC AGCTCGTGAACGAGGCCACTGTGTCGGCGCGTACGCGACGTATGCAGGAG TTCATTATGACGCGACTGGAGGAAGGAGAGTTCGATTTCTCTGGCGCGTT GGCGGAGGTGGGTGGACGACGCACGGCGGCGAGATGCTTTTATGAACTGC TCAATCTGAGCAACAAGAAGGCGTTGGCGGTGCGACAGGATGAGCCGTAC GGCACTATCTGGGCTCGTCCAATACAGCCCACGTTCAACACACTCTTGCA GTCGTGA back to topprotein sequence of Gcaud2464.t1 >Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=669bp
MFYSQHVLTKKGPLAKIWLAAHMHNKLTKAMVFSTNIQHAVSSILTPDVP MALRLTSNLLLGVVRILSRKTKYLLQESSDAMTRLKLTFRARTAAHPDAL PTNVAPLPAITLPSIDALQPPNIDLHLVPSRLEPPPSSAFLAADRDITIH QFAGGLMGGIIDAFSLEPQLPRDADAALELDTQPLLFTPSQRVRHTPLTP SVRSSEPSAERLRAEDEQERAAESPAPPPLLPVERERLELEPEEEPSLVF GERVPSPPATPPAREAVPLPTPPMPESAEPIAPPSPMPSDAAIPSARISV GSDRLELQPSPPGPVAPTEPERTPPLSPLPPPLPPSSPLPPEPEPGQPPA SPPTPRRGRKRKLYVLADEGATEISAAQFRAALNDTSDLLRQQQPVQRRR VRAGAAERFEQLISRPTVPLAPQLMQLFEANFRAHELIVASPISDADLGG EGEAVGEARKELEAQEEEEEELRKEREEVEAEKEMRVEKEVTADPSMIQL EEMEAVVPRVEEEDIMPVAAVPAPRDTISPVLPPALPETEEPRAVSMGRE SVAVSVAASIAADDEAQFTLRQVADTAAQVDGEQLVNEATVSARTRRMQE FIMTRLEEGEFDFSGALAEVGGRRTAARCFYELLNLSNKKALAVRQDEPY GTIWARPIQPTFNTLLQS* back to topmRNA from alignment at NODE_1614_length_9483_cov_3.228492:526..2532+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:526..2532+ (Gracilaria caudata M_176_S67 male) ATGTTCTACTCGCAGCATGTTCTCACCAAGAAGGGTCCCCTCGCCAAGAT
ATGGCTCGCCGCGCACATGCACAACAAACTCACCAAGGCCATGGTGTTCT
CCACCAACATCCAACACGCCGTGTCCTCCATTCTCACCCCCGACGTGCCC
ATGGCCCTCCGTCTCACCTCCAACCTTCTGCTTGGCGTCGTGCGCATTCT
CTCCCGCAAAACGAAGTATCTGCTTCAAGAATCCTCTGATGCCATGACGC
GTCTCAAGCTCACCTTCCGCGCACGCACTGCCGCGCACCCCGACGCCCTC
CCCACCAACGTCGCGCCCTTACCCGCCATCACGCTCCCGTCCATCGACGC
GCTACAACCTCCAAACATCGATCTGCACCTGGTGCCGTCGCGTCTCGAGC
CGCCGCCCTCGTCCGCATTCCTGGCCGCCGATCGCGACATCACCATCCAC
CAATTCGCCGGCGGGCTTATGGGCGGTATCATCGATGCCTTCTCGTTGGA
ACCACAACTTCCGCGCGATGCTGACGCCGCGCTGGAGCTCGATACGCAGC
CGTTGCTGTTCACGCCAAGCCAGCGTGTGCGTCACACCCCTCTCACCCCG
TCCGTCCGCAGCTCCGAGCCCTCCGCGGAGCGCCTGCGCGCCGAAGATGA
GCAAGAGCGCGCGGCCGAATCGCCCGCGCCACCGCCGCTGTTGCCTGTGG
AGCGCGAGCGACTGGAATTGGAGCCGGAAGAGGAACCTTCGTTAGTCTTT
GGCGAACGTGTTCCGTCGCCTCCTGCTACGCCGCCGGCGCGCGAAGCGGT
GCCGCTACCCACGCCCCCCATGCCGGAGTCTGCGGAGCCTATTGCGCCGC
CGTCGCCGATGCCGTCCGACGCCGCGATACCTTCCGCTCGCATCTCCGTC
GGCAGCGACCGTCTAGAGCTCCAACCCTCGCCGCCCGGCCCCGTTGCGCC
CACCGAACCCGAGCGAACTCCTCCCTTGTCGCCGCTACCACCGCCCCTAC
CACCCAGTTCCCCCCTGCCACCCGAACCCGAGCCCGGGCAACCACCGGCC
TCCCCGCCCACGCCGCGGCGCGGACGCAAACGCAAGCTGTACGTGCTGGC
GGACGAGGGCGCCACCGAAATCTCCGCCGCACAGTTCCGCGCCGCGCTCA
ACGACACCTCTGATCTGTTGCGCCAGCAACAGCCGGTGCAGCGGCGGCGT
GTACGCGCCGGCGCGGCGGAGCGCTTTGAGCAATTGATTTCGAGACCGAC
TGTGCCGTTGGCGCCGCAGCTGATGCAGCTGTTCGAAGCGAATTTCCGTG
CGCACGAGCTGATTGTAGCGAGCCCGATttcggacgcggaccttgggggg
gagggggaggcggtgggggaggcgcggaaggagcttgaggctcaggagga
ggaggaggaggagctgcggaaggagcgtgaagaggtTGAAGCGGAGAAGG
AGATGCGTGTTGAGAAGGAGGTCACCGCTGACCCTTCCATGATACAGCTG
GAGGAGATGGAAGCAGTGGTGCCGCGCGTAGAGGAAGAGGATATCATGCC
TGTCGCTGCGGTCCCAGCGCCTCGTGACACAATCTCACCCGTGCTGCCGC
CAGCGCTGCCGGAGACGGAAGAACCGCGCGCGGTGTCGATGGGACGCGAG
TCGGTGGCGGTGTCAGTAGCGGCGTCTATCGCGGCGGACGACGAAGCTCA
GTTCACGCTTCGACAAGTGGCCGATACCGCGGCGCAAGTAGACGGCGAAC
AGCTCGTGAACGAGGCCACTGTGTCGGCGCGTACGCGACGTATGCAGGAG
TTCATTATGACGCGACTGGAGGAAGGAGAGTTCGATTTCTCTGGCGCGTT
GGCGGAGGTGGGTGGACGACGCACGGCGGCGAGATGCTTTTATGAACTGC
TCAATCTGAGCAACAAGAAGGCGTTGGCGGTGCGACAGGATGAGCCGTAC
GGCACTATCTGGGCTCGTCCAATACAGCCCACGTTCAACACACTCTTGCA
GTCGTGA back to topCoding sequence (CDS) from alignment at NODE_1614_length_9483_cov_3.228492:526..2532+ >Gcaud2464.t1 ID=Gcaud2464.t1|Name=Gcaud2464.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2007bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:526..2532+ (Gracilaria caudata M_176_S67 male) ATGTTCTACTCGCAGCATGTTCTCACCAAGAAGGGTCCCCTCGCCAAGAT ATGGCTCGCCGCGCACATGCACAACAAACTCACCAAGGCCATGGTGTTCT CCACCAACATCCAACACGCCGTGTCCTCCATTCTCACCCCCGACGTGCCC ATGGCCCTCCGTCTCACCTCCAACCTTCTGCTTGGCGTCGTGCGCATTCT CTCCCGCAAAACGAAGTATCTGCTTCAAGAATCCTCTGATGCCATGACGC GTCTCAAGCTCACCTTCCGCGCACGCACTGCCGCGCACCCCGACGCCCTC CCCACCAACGTCGCGCCCTTACCCGCCATCACGCTCCCGTCCATCGACGC GCTACAACCTCCAAACATCGATCTGCACCTGGTGCCGTCGCGTCTCGAGC CGCCGCCCTCGTCCGCATTCCTGGCCGCCGATCGCGACATCACCATCCAC CAATTCGCCGGCGGGCTTATGGGCGGTATCATCGATGCCTTCTCGTTGGA ACCACAACTTCCGCGCGATGCTGACGCCGCGCTGGAGCTCGATACGCAGC CGTTGCTGTTCACGCCAAGCCAGCGTGTGCGTCACACCCCTCTCACCCCG TCCGTCCGCAGCTCCGAGCCCTCCGCGGAGCGCCTGCGCGCCGAAGATGA GCAAGAGCGCGCGGCCGAATCGCCCGCGCCACCGCCGCTGTTGCCTGTGG AGCGCGAGCGACTGGAATTGGAGCCGGAAGAGGAACCTTCGTTAGTCTTT GGCGAACGTGTTCCGTCGCCTCCTGCTACGCCGCCGGCGCGCGAAGCGGT GCCGCTACCCACGCCCCCCATGCCGGAGTCTGCGGAGCCTATTGCGCCGC CGTCGCCGATGCCGTCCGACGCCGCGATACCTTCCGCTCGCATCTCCGTC GGCAGCGACCGTCTAGAGCTCCAACCCTCGCCGCCCGGCCCCGTTGCGCC CACCGAACCCGAGCGAACTCCTCCCTTGTCGCCGCTACCACCGCCCCTAC CACCCAGTTCCCCCCTGCCACCCGAACCCGAGCCCGGGCAACCACCGGCC TCCCCGCCCACGCCGCGGCGCGGACGCAAACGCAAGCTGTACGTGCTGGC GGACGAGGGCGCCACCGAAATCTCCGCCGCACAGTTCCGCGCCGCGCTCA ACGACACCTCTGATCTGTTGCGCCAGCAACAGCCGGTGCAGCGGCGGCGT GTACGCGCCGGCGCGGCGGAGCGCTTTGAGCAATTGATTTCGAGACCGAC TGTGCCGTTGGCGCCGCAGCTGATGCAGCTGTTCGAAGCGAATTTCCGTG CGCACGAGCTGATTGTAGCGAGCCCGATttcggacgcggaccttgggggg gagggggaggcggtgggggaggcgcggaaggagcttgaggctcaggagga ggaggaggaggagctgcggaaggagcgtgaagaggtTGAAGCGGAGAAGG AGATGCGTGTTGAGAAGGAGGTCACCGCTGACCCTTCCATGATACAGCTG GAGGAGATGGAAGCAGTGGTGCCGCGCGTAGAGGAAGAGGATATCATGCC TGTCGCTGCGGTCCCAGCGCCTCGTGACACAATCTCACCCGTGCTGCCGC CAGCGCTGCCGGAGACGGAAGAACCGCGCGCGGTGTCGATGGGACGCGAG TCGGTGGCGGTGTCAGTAGCGGCGTCTATCGCGGCGGACGACGAAGCTCA GTTCACGCTTCGACAAGTGGCCGATACCGCGGCGCAAGTAGACGGCGAAC AGCTCGTGAACGAGGCCACTGTGTCGGCGCGTACGCGACGTATGCAGGAG TTCATTATGACGCGACTGGAGGAAGGAGAGTTCGATTTCTCTGGCGCGTT GGCGGAGGTGGGTGGACGACGCACGGCGGCGAGATGCTTTTATGAACTGC TCAATCTGAGCAACAAGAAGGCGTTGGCGGTGCGACAGGATGAGCCGTAC GGCACTATCTGGGCTCGTCCAATACAGCCCACGTTCAACACACTCTTGCA GTCGTGA back to top
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